Cow genome map

Conread name: Thy1-THY010009G06

Conread position: 1-181
Cow position: chr20:21768099-21768284 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 139
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 69, 120

Conread position: 1-268
Cow position: chr20:23902130-23901857 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 181
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 69, 152

Conread position: 1-289
Cow position: chr20:24507565-24507855 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 198
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 78, 58

Conread position: 1-291
Cow position: chr20:38654345-38654641 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 203
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 80, 152

Conread position: 1-295
Cow position: chr20:25330651-25330948 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 207
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 67, 62

Conread position: 2-143
Cow position: chr20:40781252-40781102 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 69, 0

Conread position: 2-155
Cow position: chr20:12694818-12694654 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 13, 0

Conread position: 2-160
Cow position: chr20:40423815-40423980 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 132
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 69, 107

Conread position: 2-183
Cow position: chr20:9511304-9511484 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 149
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 73, 44

Conread position: 2-202
Cow position: chr20:11454089-11454297 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 150
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 61, 161

Conread position: 2-204
Cow position: chr20:16526811-16526601 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 151
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 61, 200

Conread position: 2-252
Cow position: chr20:14327102-14327358 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 176
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 60, 116

Conread position: 2-259
Cow position: chr20:6055217-6055475 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 184
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 59, 148

Conread position: 2-273
Cow position: chr20:14877572-14877295 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 142

Conread position: 2-276
Cow position: chr20:19155649-19155930 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 206
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 61, 152

Conread position: 2-282
Cow position: chr20:19364370-19364659 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 136

Conread position: 2-288
Cow position: chr20:10035236-10035519 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 128

Conread position: 2-290
Cow position: chr20:3782189-3782486 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 153

Conread position: 2-290
Cow position: chr20:6258786-6259074 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 47

Conread position: 2-290
Cow position: chr20:12155858-12156139 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 61

Conread position: 2-290
Cow position: chr20:12333189-12332901 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 76

Conread position: 2-290
Cow position: chr20:14512209-14511913 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 114

Conread position: 2-290
Cow position: chr20:27994011-27994307 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 151

Conread position: 2-293
Cow position: chr20:6097156-6097449 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 94

Conread position: 2-293
Cow position: chr20:35843922-35844218 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 144

Conread position: 2-293
Cow position: chr20:40256176-40255878 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 149

Conread position: 2-294
Cow position: chr20:4205163-4204868 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 152

Conread position: 2-294
Cow position: chr20:9589292-9588990 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 212
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 61, 153

Conread position: 2-294
Cow position: chr20:9707625-9707916 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 216
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 62, 115

Conread position: 2-294
Cow position: chr20:19017898-19018190 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 210
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 73, 132

Conread position: 2-294
Cow position: chr20:20935623-20935916 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 207
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 59, 149

Conread position: 2-294
Cow position: chr20:21398331-21398033 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 208
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 61, 144

Conread position: 2-294
Cow position: chr20:26052839-26053139 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 214
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 61, 152

Conread position: 2-294
Cow position: chr20:27000009-26999710 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 151

Conread position: 2-294
Cow position: chr20:28113496-28113204 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 152

Conread position: 2-294
Cow position: chr20:31846315-31846613 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 216
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 73, 25

Conread position: 2-294
Cow position: chr20:34597847-34598141 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 27

Conread position: 2-294
Cow position: chr20:35112543-35112245 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 209
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 73, 115

Conread position: 2-295
Cow position: chr20:7568459-7568752 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 120

Conread position: 2-295
Cow position: chr20:7592945-7593239 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 121

Conread position: 2-295
Cow position: chr20:28294833-28294525 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 222
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 61, 91

Conread position: 2-307
Cow position: chr20:13050044-13050354 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 61

Conread position: 3-238
Cow position: chr20:35145312-35145075 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 166
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 66, 133

Conread position: 3-252
Cow position: chr20:34231357-34231613 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 178
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 60, 152

Conread position: 3-265
Cow position: chr20:42254532-42254790 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 195
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 65, 50

Conread position: 3-290
Cow position: chr20:16515836-16515541 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 202
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 60, 151

Conread position: 3-293
Cow position: chr20:13303785-13304083 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 209
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 59, 151

Conread position: 3-293
Cow position: chr20:26738290-26737992 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 209
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 78, 151

Conread position: 3-293
Cow position: chr20:28165355-28165063 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 195
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 60, 131

Conread position: 3-294
Cow position: chr20:775171-774872 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 207
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 60, 151

Conread position: 3-294
Cow position: chr20:826293-825994 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 211
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 59, 151

Conread position: 3-294
Cow position: chr20:5503234-5503533 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 211
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 59, 151

Conread position: 3-294
Cow position: chr20:6135478-6135776 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 212
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 59, 182

Conread position: 3-294
Cow position: chr20:6550485-6550784 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 210
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 59, 149

Conread position: 3-294
Cow position: chr20:8445925-8445627 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 214
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 59, 151

Conread position: 3-294
Cow position: chr20:9223365-9223066 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 208
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 59, 151

Conread position: 3-294
Cow position: chr20:10921413-10921709 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 203
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 60, 148

Conread position: 3-294
Cow position: chr20:11331161-11331460 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 208
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 59, 151

Conread position: 3-294
Cow position: chr20:12434887-12435185 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 210
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 60, 149

Conread position: 3-294
Cow position: chr20:12567807-12568102 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 207
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 60, 145

Conread position: 3-294
Cow position: chr20:14925129-14925428 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 215
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 59, 151

Conread position: 3-294
Cow position: chr20:15089859-15090158 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 210
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 59, 149

Conread position: 3-294
Cow position: chr20:16559019-16559318 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 210
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 59, 151

Conread position: 3-294
Cow position: chr20:17657719-17658017 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 208
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 60, 149

Conread position: 3-294
Cow position: chr20:20439456-20439756 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 209
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 59, 151

Conread position: 3-294
Cow position: chr20:22048879-22048580 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 210
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 78, 151

Conread position: 3-294
Cow position: chr20:22060664-22060963 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 211
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 59, 151

Conread position: 3-294
Cow position: chr20:22185501-22185798 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 205
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 60, 151

Conread position: 3-294
Cow position: chr20:22209134-22208835 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 204
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 60, 149

Conread position: 3-294
Cow position: chr20:22222091-22222391 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 204
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 60, 0

Conread position: 3-294
Cow position: chr20:23802663-23802364 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 206
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 59, 149

Conread position: 3-294
Cow position: chr20:25658510-25658809 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 152

Conread position: 3-294
Cow position: chr20:27876996-27876695 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 210
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 60, 45

Conread position: 3-294
Cow position: chr20:28560381-28560671 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 207
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 60, 149

Conread position: 3-294
Cow position: chr20:28725271-28724971 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 207
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 50, 148

Conread position: 3-294
Cow position: chr20:29370908-29371207 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 206
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 60, 182

Conread position: 3-294
Cow position: chr20:31504846-31504544 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 211
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 59, 0

Conread position: 3-294
Cow position: chr20:37154453-37154753 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 209
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 59, 151

Conread position: 3-296
Cow position: chr20:33731266-33730970 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 206
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 60, 143

Conread position: 3-315
Cow position: chr20:34458757-34459080 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 188
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 59, 153

Conread position: 4-294
Cow position: chr20:24904030-24904330 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 152

Conread position: 8-151
Cow position: chr20:17845224-17845071 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 63, 0

Conread position: 8-242
Cow position: chr20:18322056-18322291 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 139

Conread position: 8-287
Cow position: chr20:6239633-6239914 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 192
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 55, 141

Conread position: 8-288
Cow position: chr20:12826968-12827248 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 195
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 55, 151

Conread position: 8-294
Cow position: chr20:7512428-7512721 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 150

Conread position: 8-294
Cow position: chr20:13955132-13954838 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 213
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 53, 149

Conread position: 8-294
Cow position: chr20:20731766-20731472 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 214
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 54, 155

Conread position: 8-311
Cow position: chr20:24660597-24660291 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 172
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 68, 126

Conread position: 9-205
Cow position: chr20:19146135-19145935 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 144
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 54, 106

Conread position: 9-245
Cow position: chr20:25856675-25856438 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 169
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 54, 121

Conread position: 10-293
Cow position: chr20:7995037-7995328 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 153

Conread position: 10-294
Cow position: chr20:19352570-19352856 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 202
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 64, 137

Conread position: 10-294
Cow position: chr20:24399359-24399651 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 142

Conread position: 11-180
Cow position: chr20:22006721-22006553 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 49, 136

Conread position: 11-293
Cow position: chr20:29806429-29806725 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 201
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 49, 208

Conread position: 11-300
Cow position: chr20:26076061-26075766 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 212
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 52, 142

Conread position: 13-294
Cow position: chr20:18490451-18490163 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 207
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 62, 162

Show alignments to all cow chromosomes.