Cow genome map
| Conread name: | Thy1-THY010009G06 |
| Conread position: | 1-275 |
| Cow position: | chr27:18954489-18954207 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 42, 31 |
| Conread position: | 1-288 |
| Cow position: | chr27:9262831-9263126 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 74, 153 |
| Conread position: | 1-290 |
| Cow position: | chr27:21451889-21451593 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 215 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 62, 153 |
| Conread position: | 1-290 |
| Cow position: | chr27:30783349-30783053 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 70, 156 |
| Conread position: | 2-153 |
| Cow position: | chr27:816318-816476 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 60, 154 |
| Conread position: | 2-173 |
| Cow position: | chr27:4834589-4834412 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 58, 119 |
| Conread position: | 2-204 |
| Cow position: | chr27:16332034-16332243 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 61, 151 |
| Conread position: | 2-245 |
| Cow position: | chr27:21350292-21350042 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 61, 150 |
| Conread position: | 2-276 |
| Cow position: | chr27:15866858-15867132 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 73, 146 |
| Conread position: | 2-288 |
| Cow position: | chr27:2681965-2681674 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 61, 152 |
| Conread position: | 2-288 |
| Cow position: | chr27:23317507-23317791 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 66, 61 |
| Conread position: | 2-288 |
| Cow position: | chr27:25784317-25784602 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 128 |
| Conread position: | 2-290 |
| Cow position: | chr27:1501958-1501674 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 149 |
| Conread position: | 2-290 |
| Cow position: | chr27:5990600-5990897 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 61, 185 |
| Conread position: | 2-294 |
| Cow position: | chr27:1536614-1536315 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 152 |
| Conread position: | 2-294 |
| Cow position: | chr27:8291286-8290988 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 61, 150 |
| Conread position: | 2-294 |
| Cow position: | chr27:15272631-15272923 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 73, 144 |
| Conread position: | 2-294 |
| Cow position: | chr27:21392455-21392157 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 112 |
| Conread position: | 2-294 |
| Cow position: | chr27:25799703-25799401 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 69, 112 |
| Conread position: | 2-294 |
| Cow position: | chr27:26785262-26784967 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 60, 167 |
| Conread position: | 2-294 |
| Cow position: | chr27:27557249-27556951 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 218 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 17, 154 |
| Conread position: | 2-308 |
| Cow position: | chr27:14380748-14380434 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 60, 160 |
| Conread position: | 2-310 |
| Cow position: | chr27:16787853-16788164 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 73, 185 |
| Conread position: | 3-221 |
| Cow position: | chr27:3649925-3649699 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 59, 151 |
| Conread position: | 3-227 |
| Cow position: | chr27:12239511-12239280 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 58, 181 |
| Conread position: | 3-276 |
| Cow position: | chr27:27045618-27045340 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 60, 146 |
| Conread position: | 3-286 |
| Cow position: | chr27:25800767-25801052 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 60, 131 |
| Conread position: | 3-288 |
| Cow position: | chr27:12277548-12277262 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 30 |
| Conread position: | 3-290 |
| Cow position: | chr27:2557549-2557842 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 60, 131 |
| Conread position: | 3-290 |
| Cow position: | chr27:3653256-3653551 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 72, 149 |
| Conread position: | 3-290 |
| Cow position: | chr27:8427294-8427006 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 45, 68 |
| Conread position: | 3-290 |
| Cow position: | chr27:11481375-11481080 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 60, 149 |
| Conread position: | 3-290 |
| Cow position: | chr27:17565197-17565485 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 58, 112 |
| Conread position: | 3-290 |
| Cow position: | chr27:19423933-19424228 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 60, 149 |
| Conread position: | 3-290 |
| Cow position: | chr27:22647188-22647483 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 208 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 59, 151 |
| Conread position: | 3-294 |
| Cow position: | chr27:344486-344778 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 208 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 60, 149 |
| Conread position: | 3-294 |
| Cow position: | chr27:1521118-1520825 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 59, 114 |
| Conread position: | 3-294 |
| Cow position: | chr27:2001289-2000991 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 59, 182 |
| Conread position: | 3-294 |
| Cow position: | chr27:3232090-3232389 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 59, 151 |
| Conread position: | 3-294 |
| Cow position: | chr27:3990356-3990655 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 60, 149 |
| Conread position: | 3-294 |
| Cow position: | chr27:4805234-4804933 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 215 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 60, 152 |
| Conread position: | 3-294 |
| Cow position: | chr27:4824268-4823972 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 217 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 60, 152 |
| Conread position: | 3-294 |
| Cow position: | chr27:4982816-4982517 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 60, 143 |
| Conread position: | 3-294 |
| Cow position: | chr27:8201379-8201083 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 60, 182 |
| Conread position: | 3-294 |
| Cow position: | chr27:8959572-8959884 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 68, 151 |
| Conread position: | 3-294 |
| Cow position: | chr27:9970615-9970316 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 211 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 59, 151 |
| Conread position: | 3-294 |
| Cow position: | chr27:12006592-12006293 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 210 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 59, 182 |
| Conread position: | 3-294 |
| Cow position: | chr27:13353750-13353451 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 213 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 60, 151 |
| Conread position: | 3-294 |
| Cow position: | chr27:13901568-13901269 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 58, 149 |
| Conread position: | 3-294 |
| Cow position: | chr27:15033447-15033746 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 60, 149 |
| Conread position: | 3-294 |
| Cow position: | chr27:15633899-15634197 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 60, 120 |
| Conread position: | 3-294 |
| Cow position: | chr27:16030953-16031252 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 214 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 60, 151 |
| Conread position: | 3-294 |
| Cow position: | chr27:20810860-20810566 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 59, 149 |
| Conread position: | 3-294 |
| Cow position: | chr27:22797215-22797512 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 59, 198 |
| Conread position: | 3-294 |
| Cow position: | chr27:24295816-24296124 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 60, 158 |
| Conread position: | 3-294 |
| Cow position: | chr27:26330376-26330077 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 60, 182 |
| Conread position: | 3-294 |
| Cow position: | chr27:27291837-27291534 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 60, 149 |
| Conread position: | 3-294 |
| Cow position: | chr27:27729047-27729342 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 60, 132 |
| Conread position: | 3-294 |
| Cow position: | chr27:29035938-29036235 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 59, 151 |
| Conread position: | 3-294 |
| Cow position: | chr27:30306825-30307124 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 59, 151 |
| Conread position: | 3-295 |
| Cow position: | chr27:1189106-1188810 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 60, 130 |
| Conread position: | 6-294 |
| Cow position: | chr27:15375245-15374959 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 111 |
| Conread position: | 8-198 |
| Cow position: | chr27:11490061-11489862 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 62, 145 |
| Conread position: | 8-242 |
| Cow position: | chr27:25112599-25112359 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 188 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 67, 19 |
| Conread position: | 8-290 |
| Cow position: | chr27:4818851-4818565 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 51, 69 |
| Conread position: | 8-290 |
| Cow position: | chr27:19523270-19523559 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 55, 144 |
| Conread position: | 8-294 |
| Cow position: | chr27:27930635-27930353 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 43, 106 |
| Conread position: | 8-295 |
| Cow position: | chr27:2331942-2331647 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 55, 144 |
| Conread position: | 8-303 |
| Cow position: | chr27:10383870-10383583 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 55, 151 |
| Conread position: | 9-287 |
| Cow position: | chr27:8592824-8592538 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 216 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 62, 148 |
| Conread position: | 10-210 |
| Cow position: | chr27:24205697-24205906 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 54, 143 |
| Conread position: | 10-289 |
| Cow position: | chr27:7819040-7819326 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 65, 110 |
| Conread position: | 10-290 |
| Cow position: | chr27:14669627-14669346 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 142 |
| Conread position: | 18-288 |
| Cow position: | chr27:27279143-27278862 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 50, 45 |
| Conread position: | 33-255 |
| Cow position: | chr27:1588495-1588267 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 119 |
Show alignments to all cow chromosomes.