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Cow genome map

           
Conread name:
           
Thy1-THY010009G06
        

               
Conread position:
               
1-161
               

               
Cow position:
               
chrX:30354642-30354484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
83, 66
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chrX:3406084-3406292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
62, 183
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chrX:24826265-24826013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
75, 51
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chrX:41304974-41305253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
67, 62
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chrX:5841552-5841277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
169, 58
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chrX:25282235-25282530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
67, 152
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chrX:20792394-20792100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
67, 62
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chrX:35024319-35024030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
11, 147
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chrX:43075141-43074842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
67, 62
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chrX:2382726-2382423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 154
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chrX:12310131-12310428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
62, 192
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chrX:20503898-20503600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
60, 120
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chrX:24174695-24174994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
59, 152
               

               
Conread position:
               
2-138
               

               
Cow position:
               
chrX:35388662-35388807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
2-171
               

               
Cow position:
               
chrX:2524476-2524652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
69, 119
               

               
Conread position:
               
2-191
               

               
Cow position:
               
chrX:8144624-8144817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
73, 147
               

               
Conread position:
               
2-205
               

               
Cow position:
               
chrX:16021119-16021329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
67, 61
               

               
Conread position:
               
2-208
               

               
Cow position:
               
chrX:6543519-6543310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
73, 124
               

               
Conread position:
               
2-210
               

               
Cow position:
               
chrX:40365488-40365705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
66, 61
               

               
Conread position:
               
2-212
               

               
Cow position:
               
chrX:41527257-41527469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
73, 152
               

               
Conread position:
               
2-227
               

               
Cow position:
               
chrX:19929692-19929460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
68, 153
               

               
Conread position:
               
2-230
               

               
Cow position:
               
chrX:4751112-4751341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
61, 147
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chrX:150728-150494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
73, 149
               

               
Conread position:
               
2-252
               

               
Cow position:
               
chrX:6766478-6766733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
66, 61
               

               
Conread position:
               
2-252
               

               
Cow position:
               
chrX:37118167-37117908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 153
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chrX:22125598-22125858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
66, 152
               

               
Conread position:
               
2-261
               

               
Cow position:
               
chrX:23415438-23415703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
66, 61
               

               
Conread position:
               
2-265
               

               
Cow position:
               
chrX:4995867-4995602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
69, 149
               

               
Conread position:
               
2-270
               

               
Cow position:
               
chrX:28866755-28867034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 152
               

               
Conread position:
               
2-279
               

               
Cow position:
               
chrX:12289978-12289702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
61, 98
               

               
Conread position:
               
2-283
               

               
Cow position:
               
chrX:29083324-29083035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
60, 161
               

               
Conread position:
               
2-288
               

               
Cow position:
               
chrX:11990893-11991187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
69, 164
               

               
Conread position:
               
2-288
               

               
Cow position:
               
chrX:24317079-24316779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
61, 283
               

               
Conread position:
               
2-288
               

               
Cow position:
               
chrX:28133353-28133063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
60, 25
               

               
Conread position:
               
2-288
               

               
Cow position:
               
chrX:47000396-47000690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 156
               

               
Conread position:
               
2-289
               

               
Cow position:
               
chrX:34222022-34221721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
60, 233
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chrX:15140279-15140569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
61, 150
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chrX:20675125-20674829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
60, 180
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chrX:22819335-22819039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
61, 150
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chrX:28518463-28518759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
82, 150
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chrX:33803738-33804025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
60, 152
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chrX:45373851-45374146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
60, 181
               

               
Conread position:
               
2-292
               

               
Cow position:
               
chrX:35609243-35608953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
73, 89
               

               
Conread position:
               
2-293
               

               
Cow position:
               
chrX:35287682-35287383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 151
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:620007-620304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 152
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:671736-672036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 152
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:1616977-1617276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 152
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:2008446-2008740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 57
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:4407140-4406841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 152
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:10866612-10866899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
60, 115
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:15151418-15151707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
69, 147
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:15260362-15260658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
60, 152
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:16278909-16278613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
61, 132
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:16325271-16325573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 12
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:17663661-17663958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
69, 12
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:17782757-17782457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
60, 152
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:20801040-20800746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
115, 146
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:21389835-21389535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
61, 185
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:21415124-21414824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
61, 183
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:21592548-21592250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
61, 144
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:21662293-21661982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
73, 149
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:21685876-21685576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
60, 152
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:24109347-24109645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 152
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:27450792-27451087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
67, 152
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:28557618-28557324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
73, 103
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:29288250-29287955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 181
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:29880023-29880321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
60, 152
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:30089789-30090085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
66, 61
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:30681247-30681541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
56, 152
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:33537832-33537541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 89
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:34993439-34993144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
23, 119
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:38228056-38228359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
23, 153
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:40070354-40070646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
60, 140
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:40560284-40560581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 149
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:40693472-40693775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
67, 188
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:41791458-41791762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:41847273-41847571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
61, 149
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:44193183-44193479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
61, 129
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:44901394-44901101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
59, 112
               

               
Conread position:
               
2-298
               

               
Cow position:
               
chrX:41733933-41734232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
61, 115
               

               
Conread position:
               
2-300
               

               
Cow position:
               
chrX:39559106-39559399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 126
               

               
Conread position:
               
2-302
               

               
Cow position:
               
chrX:47380243-47380552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
60, 178
               

               
Conread position:
               
2-305
               

               
Cow position:
               
chrX:22308320-22308620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
66, 61
               

               
Conread position:
               
3-213
               

               
Cow position:
               
chrX:23317156-23317371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
60, 102
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chrX:37134377-37134603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
60, 154
               

               
Conread position:
               
3-242
               

               
Cow position:
               
chrX:3211280-3211527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
65, 60
               

               
Conread position:
               
3-242
               

               
Cow position:
               
chrX:39939497-39939744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 151
               

               
Conread position:
               
3-272
               

               
Cow position:
               
chrX:12178935-12178653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
60, 156
               

               
Conread position:
               
3-274
               

               
Cow position:
               
chrX:12465288-12465017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
60, 148
               

               
Conread position:
               
3-276
               

               
Cow position:
               
chrX:22811146-22810864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
60, 151
               

               
Conread position:
               
3-282
               

               
Cow position:
               
chrX:29849373-29849654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
60, 113
               

               
Conread position:
               
3-286
               

               
Cow position:
               
chrX:3155329-3155616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
78, 149
               

               
Conread position:
               
3-288
               

               
Cow position:
               
chrX:13928486-13928779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
59, 150
               

               
Conread position:
               
3-289
               

               
Cow position:
               
chrX:2293344-2293636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
59, 151
               

               
Conread position:
               
3-290
               

               
Cow position:
               
chrX:323170-322875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
60, 149
               

               
Conread position:
               
3-290
               

               
Cow position:
               
chrX:5354047-5354339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
60, 107
               

               
Conread position:
               
3-290
               

               
Cow position:
               
chrX:10412719-10413014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 151
               

               
Conread position:
               
3-290
               

               
Cow position:
               
chrX:10440570-10440870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
72, 151
               

               
Conread position:
               
3-290
               

               
Cow position:
               
chrX:16702927-16702632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
60, 149
               

               
Conread position:
               
3-290
               

               
Cow position:
               
chrX:16711212-16710917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
60, 149
               

               
Conread position:
               
3-290
               

               
Cow position:
               
chrX:23341735-23342030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
60, 149
               

               
Conread position:
               
3-290
               

               
Cow position:
               
chrX:27590774-27591062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
60, 148
               

               
Conread position:
               
3-290
               

               
Cow position:
               
chrX:29099673-29099380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
60, 149
               

               
Conread position:
               
3-290
               

               
Cow position:
               
chrX:31495992-31495698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
59, 123
               

               
Conread position:
               
3-290
               

               
Cow position:
               
chrX:32145008-32145294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
67, 16
               

               
Conread position:
               
3-290
               

               
Cow position:
               
chrX:42733128-42732833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
59, 151
               

               
Conread position:
               
3-293
               

               
Cow position:
               
chrX:33763401-33763103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
78, 151
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:1550221-1549922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
60, 149
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:3081875-3082176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
59, 118
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:3372597-3372895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
58, 150
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:3464821-3465117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
60, 150
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:3649567-3649865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
60, 135
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:4343007-4342708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
59, 151
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:4905734-4906030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
60, 146
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:5289430-5289727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
60, 149
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:5361266-5360967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
59, 151
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:5646848-5647147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
59, 151
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:5866402-5866103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
59, 151
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:6372436-6372137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
59, 151
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:6453953-6453654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
59, 151
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:7485063-7484764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
59, 151
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:7551545-7551844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
59, 149
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:7755161-7754863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
59, 148
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:7809742-7810036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
73, 146
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:10059721-10059423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
59, 151
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:10445159-10445458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
59, 151
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:10528530-10528827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
59, 107
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:11409078-11409377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
59, 151
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:11461740-11462036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
60, 150
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:11976190-11976488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
60, 180
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:12346152-12345853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
60, 151
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:12360144-12359844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
59, 151
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:14049938-14050236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
59, 151
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:14782089-14782388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
60, 151
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:15121905-15122203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
67, 149
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:16085402-16085701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
59, 151
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:16086867-16087166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
59, 151
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:16465557-16465264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
59, 152
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:16526046-16525747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
60, 149
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:16782536-16782239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
59, 149
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:17290436-17290140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
59, 151
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:17994715-17994419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
59, 182
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:18023736-18024035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
59, 151
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:18244241-18243950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
60, 148
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:18488458-18488757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
59, 151
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:19399034-19398735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
59, 151
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:19473903-19474191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
122, 60
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:19608932-19608633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
60, 152
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:20020835-20020538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
59, 151
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:20953789-20953491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
60, 149
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:21226733-21226436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
60, 148
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:21582699-21582400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
60, 149
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:22077086-22077383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
60, 151
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:22538777-22539077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
60, 160
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:22612659-22612360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
59, 182
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:23022569-23022275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
60, 128
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:23387282-23387576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
60, 149
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:23395863-23395564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
60, 149
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:23452189-23452490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
60, 182
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:23986506-23986207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
59, 149
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:24483111-24483405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
67, 56
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:25289423-25289722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
59, 151
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:26230502-26230801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
58, 151
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:26508483-26508190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
57, 120
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:26531229-26530930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
60, 149
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:26760312-26760611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
59, 151
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:27095385-27095094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
60, 149
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:28058578-28058279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
78, 151
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:28503592-28503293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
59, 115
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:28588227-28587929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
60, 152
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:29225734-29225435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
59, 151
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:30053212-30053511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
59, 151
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:30199736-30200035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
59, 151
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:30228857-30229155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
60, 149
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:30455365-30455659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
60, 143
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:30836643-30836344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
60, 151
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:30964730-30965029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
59, 151
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:31202097-31201798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:32584675-32584973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
60, 149
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:32643742-32643443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
59, 151
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:34094962-34094663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
59, 151
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:35533110-35532813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
59, 107
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:36195348-36195053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
60, 178
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:36729640-36729341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
59, 151
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:38150944-38150646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
60, 182
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:38852417-38852120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 151
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:38961594-38961893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
59, 151
               

               
Conread position:
               
3-295
               

               
Cow position:
               
chrX:13206208-13205911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
60, 148
               

               
Conread position:
               
3-299
               

               
Cow position:
               
chrX:18193946-18193641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
60, 149
               

               
Conread position:
               
4-255
               

               
Cow position:
               
chrX:44054060-44053812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
122, 59
               

               
Conread position:
               
6-216
               

               
Cow position:
               
chrX:20790287-20790505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
56, 148
               

               
Conread position:
               
6-294
               

               
Cow position:
               
chrX:11499523-11499817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
56, 148
               

               
Conread position:
               
6-294
               

               
Cow position:
               
chrX:23280277-23279984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
57, 146
               

               
Conread position:
               
8-124
               

               
Cow position:
               
chrX:35847476-35847352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
8-223
               

               
Cow position:
               
chrX:27704850-27704631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
55, 179
               

               
Conread position:
               
8-250
               

               
Cow position:
               
chrX:11073948-11074182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
8-288
               

               
Cow position:
               
chrX:10438675-10438942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
118, 55
               

               
Conread position:
               
8-288
               

               
Cow position:
               
chrX:31261382-31261670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
63, 30
               

               
Conread position:
               
8-290
               

               
Cow position:
               
chrX:27754679-27754389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
55, 144
               

               
Conread position:
               
8-294
               

               
Cow position:
               
chrX:2103656-2103362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
54, 146
               

               
Conread position:
               
8-294
               

               
Cow position:
               
chrX:4767941-4767656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
67, 140
               

               
Conread position:
               
8-294
               

               
Cow position:
               
chrX:6655785-6656061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
118, 71
               

               
Conread position:
               
8-294
               

               
Cow position:
               
chrX:11744518-11744227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
60, 55
               

               
Conread position:
               
8-294
               

               
Cow position:
               
chrX:17889609-17889894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
67, 144
               

               
Conread position:
               
8-294
               

               
Cow position:
               
chrX:22887911-22887619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
55, 92
               

               
Conread position:
               
8-294
               

               
Cow position:
               
chrX:23572565-23572861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
55, 145
               

               
Conread position:
               
8-294
               

               
Cow position:
               
chrX:24280171-24279874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
55, 144
               

               
Conread position:
               
8-294
               

               
Cow position:
               
chrX:24467873-24468166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
54, 113
               

               
Conread position:
               
8-294
               

               
Cow position:
               
chrX:24588485-24588777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
55, 142
               

               
Conread position:
               
8-294
               

               
Cow position:
               
chrX:27318482-27318188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
55, 144
               

               
Conread position:
               
8-294
               

               
Cow position:
               
chrX:33583945-33583650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
60, 55
               

               
Conread position:
               
8-294
               

               
Cow position:
               
chrX:35937825-35938108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
56, 145
               

               
Conread position:
               
8-317
               

               
Cow position:
               
chrX:16046398-16046080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
54, 146
               

               
Conread position:
               
9-294
               

               
Cow position:
               
chrX:6044218-6044494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
65, 49
               

               
Conread position:
               
9-294
               

               
Cow position:
               
chrX:24346299-24346006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
53, 145
               

               
Conread position:
               
9-294
               

               
Cow position:
               
chrX:27977584-27977875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
54, 142
               

               
Conread position:
               
9-294
               

               
Cow position:
               
chrX:31728713-31728424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 140
               

               
Conread position:
               
9-294
               

               
Cow position:
               
chrX:40184323-40184030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
50, 143
               

               
Conread position:
               
9-294
               

               
Cow position:
               
chrX:42222523-42222812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
54, 170
               

               
Conread position:
               
9-299
               

               
Cow position:
               
chrX:1056136-1056434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
50, 144
               

               
Conread position:
               
10-290
               

               
Cow position:
               
chrX:28647021-28647309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
53, 60
               

               
Conread position:
               
10-294
               

               
Cow position:
               
chrX:17891795-17891503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
53, 144
               

               
Conread position:
               
25-211
               

               
Cow position:
               
chrX:17794085-17793895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
45, 124
               

               
Conread position:
               
551-718
               

               
Cow position:
               
chrX:6453666-6453504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
153, 61
               
Show alignments to all cow chromosomes.