Cow genome map
| Conread name: | Thy1-THY010011B06 |
| Conread position: | 1-208 |
| Cow position: | chr1:38414782-38414991 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 76, 178 |
| Conread position: | 1-214 |
| Cow position: | chr1:23050820-23051034 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 77, 36 |
| Conread position: | 1-215 |
| Cow position: | chr1:33712045-33712262 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 1-215 |
| Cow position: | chr1:62853862-62853647 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 165 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 76, 65 |
| Conread position: | 1-215 |
| Cow position: | chr1:72656963-72657185 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 74, 95 |
| Conread position: | 1-215 |
| Cow position: | chr1:94659672-94659880 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 76, 38 |
| Conread position: | 1-218 |
| Cow position: | chr1:42290375-42290588 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 76, 33 |
| Conread position: | 1-220 |
| Cow position: | chr1:69536884-69537103 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 142, 74 |
| Conread position: | 1-220 |
| Cow position: | chr1:89899720-89899501 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 57, 69 |
| Conread position: | 2-215 |
| Cow position: | chr1:101149815-101150031 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 167 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 2-215 |
| Cow position: | chr1:101858001-101857787 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 75, 165 |
| Conread position: | 3-215 |
| Cow position: | chr1:55323071-55322859 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 34 |
| Conread position: | 6-215 |
| Cow position: | chr1:52233125-52232917 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 137, 68 |
| Conread position: | 6-221 |
| Cow position: | chr1:99349049-99348832 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 71, 30 |
| Conread position: | 7-212 |
| Cow position: | chr1:40574203-40574411 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 7-215 |
| Cow position: | chr1:29362284-29362495 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 7-215 |
| Cow position: | chr1:32342087-32341877 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 7-215 |
| Cow position: | chr1:40053343-40053554 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 7-215 |
| Cow position: | chr1:40308054-40308261 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 136, 67 |
| Conread position: | 7-215 |
| Cow position: | chr1:56723143-56723353 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 70, 197 |
| Conread position: | 7-215 |
| Cow position: | chr1:79335817-79335606 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 166 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 7-215 |
| Cow position: | chr1:82652641-82652852 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 7-215 |
| Cow position: | chr1:82924190-82923981 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 136, 68 |
| Conread position: | 7-215 |
| Cow position: | chr1:98784038-98784248 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 70, 172 |
| Conread position: | 7-220 |
| Cow position: | chr1:18244392-18244181 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 169 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 70, 30 |
| Conread position: | 8-210 |
| Cow position: | chr1:1461339-1461138 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 47, 25 |
| Conread position: | 9-215 |
| Cow position: | chr1:67901937-67901732 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 68, 125 |
| Conread position: | 12-215 |
| Cow position: | chr1:87207435-87207229 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 19-211 |
| Cow position: | chr1:99910961-99911153 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 59, 90 |
| Conread position: | 22-214 |
| Cow position: | chr1:100597370-100597176 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 55, 5 |
| Conread position: | 27-215 |
| Cow position: | chr1:17036550-17036358 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 50, 80 |
| Conread position: | 27-215 |
| Cow position: | chr1:33895687-33895878 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 27-215 |
| Cow position: | chr1:39543779-39543968 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 50, 74 |
| Conread position: | 27-215 |
| Cow position: | chr1:71562570-71562375 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 27-215 |
| Cow position: | chr1:85791695-85791885 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 50, 31 |
| Conread position: | 27-215 |
| Cow position: | chr1:86548126-86547936 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 50, 31 |
| Conread position: | 27-215 |
| Cow position: | chr1:91899006-91899195 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 50, 102 |
| Conread position: | 32-228 |
| Cow position: | chr1:45097709-45097907 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 45, 187 |
| Conread position: | 41-215 |
| Cow position: | chr1:80359157-80358982 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 36, 132 |
| Conread position: | 43-215 |
| Cow position: | chr1:87244834-87245009 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 61-208 |
| Cow position: | chr1:13645755-13645905 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 16, 22 |
| Conread position: | 61-214 |
| Cow position: | chr1:98661269-98661112 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 19, 55 |
| Conread position: | 208-531 |
| Cow position: | chr1:26406423-26406740 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 11 |
| Conread position: | 219-532 |
| Cow position: | chr1:33419727-33420032 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 238 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 14, 117 |
| Conread position: | 220-417 |
| Cow position: | chr1:29836318-29836126 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 17, 50 |
| Conread position: | 220-459 |
| Cow position: | chr1:39060653-39060413 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 184 |
| Conread position: | 220-472 |
| Cow position: | chr1:98296806-98297063 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 224-407 |
| Cow position: | chr1:15245709-15245524 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 21, 69 |
| Conread position: | 227-452 |
| Cow position: | chr1:58148855-58149080 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 24, 71 |
| Conread position: | 229-404 |
| Cow position: | chr1:31660393-31660572 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 19, 41 |
| Conread position: | 230-404 |
| Cow position: | chr1:13697075-13696898 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 18, 40 |
| Conread position: | 230-532 |
| Cow position: | chr1:23935848-23936141 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 226 |
| Conread position: | 231-374 |
| Cow position: | chr1:17719205-17719060 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 17, 38 |
| Conread position: | 232-404 |
| Cow position: | chr1:87736871-87737044 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 17, 38 |
| Conread position: | 232-532 |
| Cow position: | chr1:29838441-29838145 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 230 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 16, 179 |
| Conread position: | 235-475 |
| Cow position: | chr1:5191968-5192205 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 16, 36 |
| Conread position: | 240-404 |
| Cow position: | chr1:66600059-66599894 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 10, 30 |
| Conread position: | 252-451 |
| Cow position: | chr1:97176019-97175819 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 146 |
| Conread position: | 315-531 |
| Cow position: | chr1:52388564-52388781 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 39, 87 |
Show alignments to all cow chromosomes.