Cow genome map
| Conread name: | Thy1-THY010011B06 |
| Conread position: | 1-215 |
| Cow position: | chr11:8262056-8261843 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 166 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 142, 72 |
| Conread position: | 1-215 |
| Cow position: | chr11:10210319-10210102 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 43, 76 |
| Conread position: | 1-215 |
| Cow position: | chr11:12351426-12351205 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 1-215 |
| Cow position: | chr11:21466720-21466937 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 169 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 1-215 |
| Cow position: | chr11:33044477-33044262 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 76, 65 |
| Conread position: | 1-215 |
| Cow position: | chr11:37065480-37065261 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 174 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 76, 65 |
| Conread position: | 1-215 |
| Cow position: | chr11:44495954-44495735 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 43, 56 |
| Conread position: | 1-215 |
| Cow position: | chr11:75920058-75920273 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 169 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 76, 30 |
| Conread position: | 1-215 |
| Cow position: | chr11:85394167-85393951 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 167 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 76, 64 |
| Conread position: | 1-221 |
| Cow position: | chr11:66726109-66726331 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 174 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 76, 51 |
| Conread position: | 1-231 |
| Cow position: | chr11:87127487-87127715 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 80, 36 |
| Conread position: | 5-215 |
| Cow position: | chr11:42428982-42429193 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 170 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 47, 21 |
| Conread position: | 7-208 |
| Cow position: | chr11:15998544-15998746 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 70, 114 |
| Conread position: | 7-215 |
| Cow position: | chr11:3492660-3492871 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 163 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 7-215 |
| Cow position: | chr11:4027905-4027703 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 70, 138 |
| Conread position: | 7-215 |
| Cow position: | chr11:15983273-15983484 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 7-215 |
| Cow position: | chr11:23876954-23877162 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 170 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 13, 92 |
| Conread position: | 7-215 |
| Cow position: | chr11:30304887-30305091 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 150, 67 |
| Conread position: | 7-215 |
| Cow position: | chr11:40776893-40776682 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 7-215 |
| Cow position: | chr11:57628397-57628186 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 7-218 |
| Cow position: | chr11:8282726-8282938 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 37, 59 |
| Conread position: | 7-220 |
| Cow position: | chr11:58134019-58134235 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 11-215 |
| Cow position: | chr11:44860876-44860669 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 21-215 |
| Cow position: | chr11:1496410-1496214 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 56, 80 |
| Conread position: | 27-215 |
| Cow position: | chr11:17108016-17107826 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 52, 39 |
| Conread position: | 27-215 |
| Cow position: | chr11:37477450-37477259 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 27-215 |
| Cow position: | chr11:67846899-67846711 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 50, 12 |
| Conread position: | 33-198 |
| Cow position: | chr11:7688284-7688453 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 56-215 |
| Cow position: | chr11:25527258-25527418 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 21, 44 |
| Conread position: | 68-209 |
| Cow position: | chr11:8519703-8519847 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 75-215 |
| Cow position: | chr11:9734929-9734787 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 76-234 |
| Cow position: | chr11:17280575-17280417 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 67, 142 |
| Conread position: | 170-532 |
| Cow position: | chr11:21512626-21512280 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 85 |
| Conread position: | 216-453 |
| Cow position: | chr11:76532399-76532641 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 15, 68 |
| Conread position: | 230-403 |
| Cow position: | chr11:70890518-70890344 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 20, 28 |
| Conread position: | 232-574 |
| Cow position: | chr11:76534359-76534019 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 175 |
| Conread position: | 236-354 |
| Cow position: | chr11:75854137-75854017 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 239-420 |
| Cow position: | chr11:48660366-48660550 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 11, 134 |
| Conread position: | 240-407 |
| Cow position: | chr11:62235996-62235828 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 8, 26 |
| Conread position: | 250-475 |
| Cow position: | chr11:12409761-12409529 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 34, 134 |
| Conread position: | 282-541 |
| Cow position: | chr11:16880969-16880721 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 27 |
Show alignments to all cow chromosomes.