Cow genome map
| Conread name: | Thy1-THY010011B06 |
| Conread position: | 1-211 |
| Cow position: | chr2:6772700-6772487 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 164 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 1-211 |
| Cow position: | chr2:46402790-46402583 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 142, 76 |
| Conread position: | 1-211 |
| Cow position: | chr2:82167080-82167293 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 162 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 1-211 |
| Cow position: | chr2:85356298-85356087 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 164 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 76, 32 |
| Conread position: | 1-215 |
| Cow position: | chr2:768922-768700 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 76, 68 |
| Conread position: | 1-215 |
| Cow position: | chr2:4404876-4404659 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 165 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 1-215 |
| Cow position: | chr2:10711958-10711748 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 142, 32 |
| Conread position: | 1-215 |
| Cow position: | chr2:34565455-34565241 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 142, 119 |
| Conread position: | 1-215 |
| Cow position: | chr2:41656554-41656771 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 1-215 |
| Cow position: | chr2:44106636-44106421 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 76, 36 |
| Conread position: | 1-215 |
| Cow position: | chr2:52655941-52656154 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 43, 74 |
| Conread position: | 1-215 |
| Cow position: | chr2:63293102-63292878 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 1-215 |
| Cow position: | chr2:74391645-74391427 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 32, 100 |
| Conread position: | 1-215 |
| Cow position: | chr2:78741602-78741818 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 76, 43 |
| Conread position: | 1-220 |
| Cow position: | chr2:28643647-28643438 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 142, 43 |
| Conread position: | 1-221 |
| Cow position: | chr2:422543-422761 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 169 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 76, 116 |
| Conread position: | 5-234 |
| Cow position: | chr2:7211180-7211405 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 30 |
| Conread position: | 6-210 |
| Cow position: | chr2:26868748-26868951 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 71, 52 |
| Conread position: | 7-214 |
| Cow position: | chr2:72109049-72108843 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 126, 18 |
| Conread position: | 7-215 |
| Cow position: | chr2:2101990-2101782 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 136, 59 |
| Conread position: | 7-215 |
| Cow position: | chr2:13046214-13046017 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 136, 62 |
| Conread position: | 7-215 |
| Cow position: | chr2:41685991-41686204 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 7-215 |
| Cow position: | chr2:44090777-44090988 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 7-215 |
| Cow position: | chr2:44935607-44935399 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 168 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 70, 32 |
| Conread position: | 19-215 |
| Cow position: | chr2:176039-175840 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 19-215 |
| Cow position: | chr2:44991790-44991593 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 158 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 58, 20 |
| Conread position: | 19-221 |
| Cow position: | chr2:22077281-22077486 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 21-214 |
| Cow position: | chr2:11969279-11969082 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 22-215 |
| Cow position: | chr2:32654832-32655023 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 22, 9 |
| Conread position: | 22-215 |
| Cow position: | chr2:39421071-39421266 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 55, 25 |
| Conread position: | 24-215 |
| Cow position: | chr2:10843850-10843662 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 53, 28 |
| Conread position: | 24-215 |
| Cow position: | chr2:28621333-28621139 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 14, 156 |
| Conread position: | 24-215 |
| Cow position: | chr2:52152364-52152175 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 119, 50 |
| Conread position: | 26-215 |
| Cow position: | chr2:36031239-36031046 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 27-215 |
| Cow position: | chr2:10612130-10611938 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 27-234 |
| Cow position: | chr2:1673169-1672962 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 163 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 50, 191 |
| Conread position: | 27-234 |
| Cow position: | chr2:39621784-39621994 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 166 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 17, 194 |
| Conread position: | 33-215 |
| Cow position: | chr2:26865052-26864867 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 33-229 |
| Cow position: | chr2:51305231-51305029 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 43, 14 |
| Conread position: | 37-215 |
| Cow position: | chr2:14822008-14822189 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 61-210 |
| Cow position: | chr2:14560717-14560869 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 61-215 |
| Cow position: | chr2:2363715-2363872 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 61-215 |
| Cow position: | chr2:54649288-54649134 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 82, 26 |
| Conread position: | 78-209 |
| Cow position: | chr2:5481117-5480985 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 65, 32 |
| Conread position: | 201-473 |
| Cow position: | chr2:46296585-46296858 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 34 |
| Conread position: | 212-401 |
| Cow position: | chr2:41124450-41124642 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 37, 177 |
| Conread position: | 215-453 |
| Cow position: | chr2:50541898-50542136 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 63 |
| Conread position: | 217-434 |
| Cow position: | chr2:22360172-22359950 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 172 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 219-394 |
| Cow position: | chr2:39513336-39513154 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 219-532 |
| Cow position: | chr2:6301412-6301112 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 30 |
| Conread position: | 219-532 |
| Cow position: | chr2:7445158-7444854 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 235 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 14, 92 |
| Conread position: | 220-401 |
| Cow position: | chr2:64793328-64793141 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 220-407 |
| Cow position: | chr2:16364564-16364373 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 220-475 |
| Cow position: | chr2:46275983-46275725 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 29, 38 |
| Conread position: | 220-532 |
| Cow position: | chr2:37731175-37731478 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 69 |
| Conread position: | 228-532 |
| Cow position: | chr2:53319167-53319466 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 139 |
| Conread position: | 229-404 |
| Cow position: | chr2:69641241-69641418 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 19, 42 |
| Conread position: | 230-450 |
| Cow position: | chr2:47839430-47839206 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 232-453 |
| Cow position: | chr2:18011639-18011416 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 17, 175 |
| Conread position: | 243-576 |
| Cow position: | chr2:4691926-4691602 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 117, 33 |
| Conread position: | 247-400 |
| Cow position: | chr2:82188056-82187903 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 80, 22 |
| Conread position: | 247-532 |
| Cow position: | chr2:6731273-6731548 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 113, 19 |
| Conread position: | 250-475 |
| Cow position: | chr2:40049497-40049724 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 252-408 |
| Cow position: | chr2:41579926-41580081 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 91, 17 |
| Conread position: | 266-452 |
| Cow position: | chr2:33112408-33112223 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 78, 33 |
| Conread position: | 278-452 |
| Cow position: | chr2:21039205-21039029 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 318-548 |
| Cow position: | chr2:4966528-4966306 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 48, 137 |
| Conread position: | 338-532 |
| Cow position: | chr2:40737622-40737805 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 11, 117 |
Show alignments to all cow chromosomes.