Cow genome map
| Conread name: | Thy1-THY010011B06 |
| Conread position: | 1-196 |
| Cow position: | chr3:42630875-42631071 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 76, 136 |
| Conread position: | 1-205 |
| Cow position: | chr3:21945547-21945342 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 172 |
| Conread position: | 1-215 |
| Cow position: | chr3:2633785-2634002 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 1-215 |
| Cow position: | chr3:9716674-9716891 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 167 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 1-215 |
| Cow position: | chr3:14754438-14754220 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-215 |
| Cow position: | chr3:15178170-15178388 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 78, 129 |
| Conread position: | 1-215 |
| Cow position: | chr3:42580105-42579890 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 142, 38 |
| Conread position: | 1-215 |
| Cow position: | chr3:56321177-56321392 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 76, 64 |
| Conread position: | 1-215 |
| Cow position: | chr3:64358307-64358093 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 76, 131 |
| Conread position: | 1-218 |
| Cow position: | chr3:52864613-52864387 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 76, 223 |
| Conread position: | 1-220 |
| Cow position: | chr3:6685321-6685543 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 40 |
| Conread position: | 1-228 |
| Cow position: | chr3:55229836-55229612 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 142, 37 |
| Conread position: | 3-215 |
| Cow position: | chr3:5047322-5047107 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 3-215 |
| Cow position: | chr3:31354396-31354188 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 168 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 74, 47 |
| Conread position: | 5-215 |
| Cow position: | chr3:36098841-36098643 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 72, 124 |
| Conread position: | 5-215 |
| Cow position: | chr3:54864833-54864622 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 41 |
| Conread position: | 6-215 |
| Cow position: | chr3:472397-472609 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 6-215 |
| Cow position: | chr3:5829763-5829552 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 71, 203 |
| Conread position: | 7-214 |
| Cow position: | chr3:14439894-14439685 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 70, 30 |
| Conread position: | 7-214 |
| Cow position: | chr3:66638606-66638816 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 161 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 7-215 |
| Cow position: | chr3:3054465-3054673 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 136, 173 |
| Conread position: | 7-215 |
| Cow position: | chr3:18357021-18356810 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 164 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 7-215 |
| Cow position: | chr3:19878528-19878735 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 136, 70 |
| Conread position: | 7-215 |
| Cow position: | chr3:21182818-21182607 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 165 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 7-215 |
| Cow position: | chr3:29327114-29326903 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 73, 34 |
| Conread position: | 7-215 |
| Cow position: | chr3:36882052-36881845 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 70, 31 |
| Conread position: | 7-215 |
| Cow position: | chr3:49677653-49677863 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 7-215 |
| Cow position: | chr3:53515484-53515690 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 70, 18 |
| Conread position: | 7-234 |
| Cow position: | chr3:29595062-29595288 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 37, 133 |
| Conread position: | 7-234 |
| Cow position: | chr3:50128015-50127785 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 31, 213 |
| Conread position: | 7-234 |
| Cow position: | chr3:58947323-58947552 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 40, 213 |
| Conread position: | 8-215 |
| Cow position: | chr3:31898109-31897900 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 161 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 8-215 |
| Cow position: | chr3:70083778-70083575 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 70, 43 |
| Conread position: | 20-215 |
| Cow position: | chr3:39326596-39326794 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 57, 38 |
| Conread position: | 20-221 |
| Cow position: | chr3:66119534-66119739 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 21-215 |
| Cow position: | chr3:45869337-45869140 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 156 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 21-234 |
| Cow position: | chr3:36127274-36127485 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 122, 50 |
| Conread position: | 24-215 |
| Cow position: | chr3:26822616-26822432 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 53, 97 |
| Conread position: | 26-215 |
| Cow position: | chr3:207280-207084 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 27-215 |
| Cow position: | chr3:45032627-45032818 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 27-215 |
| Cow position: | chr3:66891075-66890886 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 50, 146 |
| Conread position: | 30-215 |
| Cow position: | chr3:40157616-40157429 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 149 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 37-215 |
| Cow position: | chr3:16073037-16073214 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 57, 37 |
| Conread position: | 61-215 |
| Cow position: | chr3:66990707-66990863 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 16, 50 |
| Conread position: | 214-531 |
| Cow position: | chr3:29145140-29144831 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 226 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 34, 56 |
| Conread position: | 217-402 |
| Cow position: | chr3:34233066-34233247 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 15, 32 |
| Conread position: | 220-410 |
| Cow position: | chr3:83964660-83964849 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 28, 123 |
| Conread position: | 220-458 |
| Cow position: | chr3:29084045-29084283 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 107, 29 |
| Conread position: | 220-531 |
| Cow position: | chr3:60026203-60026501 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 225 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 28, 50 |
| Conread position: | 221-532 |
| Cow position: | chr3:9005535-9005237 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 18 |
| Conread position: | 228-532 |
| Cow position: | chr3:9287509-9287224 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 228 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 52, 21 |
| Conread position: | 232-404 |
| Cow position: | chr3:79197494-79197673 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 16, 38 |
| Conread position: | 233-402 |
| Cow position: | chr3:30961370-30961197 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 7 |
| Conread position: | 242-473 |
| Cow position: | chr3:31816083-31815860 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 7, 24 |
| Conread position: | 242-526 |
| Cow position: | chr3:58244527-58244803 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 27 |
| Conread position: | 244-576 |
| Cow position: | chr3:17658073-17658396 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 238 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 149, 32 |
| Conread position: | 252-540 |
| Cow position: | chr3:35958637-35958355 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 220 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 94, 135 |
| Conread position: | 273-475 |
| Cow position: | chr3:60008962-60009165 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 161 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 68, 116 |
Show alignments to all cow chromosomes.