Cow genome map
| Conread name: | Thy1-THY010011B06 |
| Conread position: | 1-152 |
| Cow position: | chr5:27683010-27682858 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 1-195 |
| Cow position: | chr5:52805126-52805322 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 156 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 76, 99 |
| Conread position: | 1-209 |
| Cow position: | chr5:29009119-29009325 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 142, 19 |
| Conread position: | 1-214 |
| Cow position: | chr5:25000893-25000668 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-215 |
| Cow position: | chr5:25206983-25206764 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 19, 121 |
| Conread position: | 1-215 |
| Cow position: | chr5:32733493-32733276 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 1-215 |
| Cow position: | chr5:34202699-34202911 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 76, 96 |
| Conread position: | 1-215 |
| Cow position: | chr5:39165038-39164824 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 76, 40 |
| Conread position: | 1-215 |
| Cow position: | chr5:46663758-46663979 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-215 |
| Cow position: | chr5:49593697-49593479 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-220 |
| Cow position: | chr5:45700043-45700247 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 142, 74 |
| Conread position: | 2-215 |
| Cow position: | chr5:23755861-23755643 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 171 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 2-215 |
| Cow position: | chr5:61273421-61273211 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 167 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 141, 152 |
| Conread position: | 5-215 |
| Cow position: | chr5:14659330-14659119 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 163 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 72, 21 |
| Conread position: | 6-215 |
| Cow position: | chr5:32673978-32673764 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 71, 35 |
| Conread position: | 8-215 |
| Cow position: | chr5:45182343-45182127 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 19-215 |
| Cow position: | chr5:30579099-30579298 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 159 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 19-215 |
| Cow position: | chr5:32945652-32945850 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 157 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 58, 22 |
| Conread position: | 19-228 |
| Cow position: | chr5:41962461-41962250 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 166 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 58, 200 |
| Conread position: | 20-215 |
| Cow position: | chr5:28031255-28031453 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 156 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 21-229 |
| Cow position: | chr5:41551148-41550936 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 24-200 |
| Cow position: | chr5:39247600-39247422 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 27-214 |
| Cow position: | chr5:51162694-51162874 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 10, 40 |
| Conread position: | 27-215 |
| Cow position: | chr5:31706361-31706550 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 50, 136 |
| Conread position: | 27-228 |
| Cow position: | chr5:57977042-57977246 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 17, 189 |
| Conread position: | 28-215 |
| Cow position: | chr5:18653827-18654021 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 32-218 |
| Cow position: | chr5:49182060-49182246 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 45, 9 |
| Conread position: | 55-214 |
| Cow position: | chr5:27489061-27489222 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 23, 56 |
| Conread position: | 61-215 |
| Cow position: | chr5:41529768-41529617 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 16, 45 |
| Conread position: | 80-214 |
| Cow position: | chr5:24330113-24330249 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 92-228 |
| Cow position: | chr5:17774189-17774052 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 51, 126 |
| Conread position: | 148-463 |
| Cow position: | chr5:43891916-43891599 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 53 |
| Conread position: | 199-483 |
| Cow position: | chr5:75183366-75183652 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 14, 72 |
| Conread position: | 200-532 |
| Cow position: | chr5:43791572-43791892 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 11 |
| Conread position: | 219-371 |
| Cow position: | chr5:45222193-45222040 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 32, 51 |
| Conread position: | 219-434 |
| Cow position: | chr5:74452524-74452727 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 30, 92 |
| Conread position: | 219-532 |
| Cow position: | chr5:57359280-57358976 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 231 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 12, 64 |
| Conread position: | 220-530 |
| Cow position: | chr5:37944688-37944394 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 233 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 11, 83 |
| Conread position: | 220-531 |
| Cow position: | chr5:56621808-56621500 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 50 |
| Conread position: | 226-453 |
| Cow position: | chr5:41519624-41519399 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 178 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 25, 57 |
| Conread position: | 228-434 |
| Cow position: | chr5:43793403-43793199 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 23, 33 |
| Conread position: | 230-404 |
| Cow position: | chr5:61482762-61482586 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 19, 40 |
| Conread position: | 231-402 |
| Cow position: | chr5:30643810-30643637 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 18, 39 |
| Conread position: | 232-531 |
| Cow position: | chr5:47859509-47859217 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 15, 38 |
| Conread position: | 232-531 |
| Cow position: | chr5:49377167-49376875 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 16, 138 |
| Conread position: | 238-532 |
| Cow position: | chr5:39424310-39424032 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 13, 42 |
| Conread position: | 248-532 |
| Cow position: | chr5:48219422-48219692 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 112, 50 |
| Conread position: | 253-541 |
| Cow position: | chr5:29864311-29864591 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 214 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 96, 119 |
| Conread position: | 257-531 |
| Cow position: | chr5:48194028-48193762 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 207 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 88, 113 |
| Conread position: | 263-529 |
| Cow position: | chr5:48190812-48191071 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 215 |
Show alignments to all cow chromosomes.