Cow genome map
| Conread name: | Thy1-THY010011B06 |
| Conread position: | 1-187 |
| Cow position: | chrX:22130966-22130783 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 71, 35 |
| Conread position: | 1-210 |
| Cow position: | chrX:22778048-22778260 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 1-214 |
| Cow position: | chrX:24136664-24136447 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 168 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 1-214 |
| Cow position: | chrX:30142654-30142442 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 76, 38 |
| Conread position: | 1-215 |
| Cow position: | chrX:1943307-1943091 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 76, 38 |
| Conread position: | 1-215 |
| Cow position: | chrX:20803862-20804079 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 168 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 1-215 |
| Cow position: | chrX:21632847-21632634 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 170 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 142, 72 |
| Conread position: | 1-215 |
| Cow position: | chrX:24122181-24121967 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 76, 18 |
| Conread position: | 1-215 |
| Cow position: | chrX:26628296-26628079 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 167 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 1-215 |
| Cow position: | chrX:35017550-35017761 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 170 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 142, 73 |
| Conread position: | 1-215 |
| Cow position: | chrX:40057328-40057112 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 169 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 76, 85 |
| Conread position: | 1-221 |
| Cow position: | chrX:16461413-16461637 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 1-234 |
| Cow position: | chrX:24275409-24275643 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 178 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 76, 25 |
| Conread position: | 2-215 |
| Cow position: | chrX:19185219-19185015 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 156, 40 |
| Conread position: | 3-215 |
| Cow position: | chrX:2143023-2143235 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 75, 16 |
| Conread position: | 6-228 |
| Cow position: | chrX:26504930-26505149 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 72, 123 |
| Conread position: | 7-214 |
| Cow position: | chrX:2537029-2536828 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 164 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 70, 138 |
| Conread position: | 7-215 |
| Cow position: | chrX:8586836-8587047 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 162 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 7-215 |
| Cow position: | chrX:9008084-9008291 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 140, 70 |
| Conread position: | 7-215 |
| Cow position: | chrX:12804120-12803911 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 70, 32 |
| Conread position: | 7-215 |
| Cow position: | chrX:15179688-15179478 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 7-215 |
| Cow position: | chrX:18219139-18219350 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 7-215 |
| Cow position: | chrX:20316313-20316102 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 7-215 |
| Cow position: | chrX:21489973-21490182 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 70, 143 |
| Conread position: | 7-215 |
| Cow position: | chrX:22582958-22582747 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 7-215 |
| Cow position: | chrX:22619567-22619356 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 7-215 |
| Cow position: | chrX:23019066-23019278 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 70, 100 |
| Conread position: | 7-215 |
| Cow position: | chrX:24089144-24089355 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 7-215 |
| Cow position: | chrX:26767455-26767245 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 70, 46 |
| Conread position: | 7-215 |
| Cow position: | chrX:37848756-37848967 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 7-215 |
| Cow position: | chrX:39564189-39563978 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 164 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 7-220 |
| Cow position: | chrX:320211-320426 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 169 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 70, 76 |
| Conread position: | 7-221 |
| Cow position: | chrX:34988639-34988858 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 117 |
| Conread position: | 7-228 |
| Cow position: | chrX:21289749-21289526 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 70, 212 |
| Conread position: | 7-234 |
| Cow position: | chrX:22814127-22814352 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 70, 24 |
| Conread position: | 8-214 |
| Cow position: | chrX:29794370-29794162 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 69, 33 |
| Conread position: | 8-215 |
| Cow position: | chrX:21602626-21602832 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 134, 65 |
| Conread position: | 8-215 |
| Cow position: | chrX:28603713-28603505 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 139, 22 |
| Conread position: | 8-215 |
| Cow position: | chrX:29947450-29947660 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 8-215 |
| Cow position: | chrX:38146048-38146258 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 10-215 |
| Cow position: | chrX:40247565-40247361 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 164 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 68, 21 |
| Conread position: | 19-215 |
| Cow position: | chrX:5834210-5834011 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 19-215 |
| Cow position: | chrX:13006871-13006672 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 19-215 |
| Cow position: | chrX:13097517-13097318 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 19-215 |
| Cow position: | chrX:22525850-22525651 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 19-228 |
| Cow position: | chrX:44386226-44386441 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 58, 204 |
| Conread position: | 20-215 |
| Cow position: | chrX:29950819-29950620 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 24, 107 |
| Conread position: | 20-237 |
| Cow position: | chrX:11668684-11668466 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 170 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 123, 55 |
| Conread position: | 21-215 |
| Cow position: | chrX:7093354-7093551 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 21-215 |
| Cow position: | chrX:12670109-12669911 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 21-224 |
| Cow position: | chrX:16237065-16237270 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 160 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 56, 196 |
| Conread position: | 27-198 |
| Cow position: | chrX:32468468-32468640 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 88, 10 |
| Conread position: | 27-215 |
| Cow position: | chrX:2101621-2101812 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 27-215 |
| Cow position: | chrX:16363362-16363171 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 39-229 |
| Cow position: | chrX:5299445-5299255 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 39, 86 |
| Conread position: | 49-215 |
| Cow position: | chrX:31724809-31724979 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 61-229 |
| Cow position: | chrX:29285215-29285385 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 16, 39 |
| Conread position: | 76-228 |
| Cow position: | chrX:39719249-39719403 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 48, 143 |
| Conread position: | 217-531 |
| Cow position: | chrX:48183879-48184194 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 37, 255 |
| Conread position: | 219-531 |
| Cow position: | chrX:47163031-47163348 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 32, 61 |
| Conread position: | 220-413 |
| Cow position: | chrX:43819310-43819495 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 13, 100 |
| Conread position: | 224-403 |
| Cow position: | chrX:31735972-31735790 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 25, 37 |
| Conread position: | 228-431 |
| Cow position: | chrX:48131778-48131574 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 20, 39 |
| Conread position: | 230-375 |
| Cow position: | chrX:38071369-38071515 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 18, 53 |
| Conread position: | 235-406 |
| Cow position: | chrX:40713282-40713452 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 15, 26 |
| Conread position: | 240-404 |
| Cow position: | chrX:29426865-29427031 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 92, 29 |
| Conread position: | 241-380 |
| Cow position: | chrX:16901426-16901287 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 8, 29 |
| Conread position: | 243-453 |
| Cow position: | chrX:42408144-42407937 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 117, 52 |
| Conread position: | 249-404 |
| Cow position: | chrX:6818385-6818541 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 51, 21 |
Show alignments to all cow chromosomes.