Cow genome map

Conread name: Thy1-THY010019C10

Conread position: 1-471
Cow position: chr1:57662827-57663306 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 265

Conread position: 1-471
Cow position: chr1:72038756-72038278 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 82

Conread position: 1-476
Cow position: chr1:99019209-99018721 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 44

Conread position: 1-563
Cow position: chr1:24652095-24652678 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 25

Conread position: 1-563
Cow position: chr1:98659105-98658515 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 272

Conread position: 2-279
Cow position: chr1:81863700-81863406 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 202
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 23, 191

Conread position: 2-471
Cow position: chr1:93855323-93855804 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 327

Conread position: 2-589
Cow position: chr1:42737263-42737868 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 331

Conread position: 5-471
Cow position: chr1:53199347-53199830 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 159

Conread position: 5-471
Cow position: chr1:86595689-86595207 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 5-481
Cow position: chr1:28278989-28279489 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 329
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 20, 129

Conread position: 5-558
Cow position: chr1:40683914-40683345 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 77

Conread position: 5-588
Cow position: chr1:79111303-79111904 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 18

Conread position: 6-554
Cow position: chr1:31359229-31359794 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 49

Conread position: 7-471
Cow position: chr1:31397504-31397973 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 284

Conread position: 8-223
Cow position: chr1:33896556-33896778 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 151
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 91, 0

Conread position: 8-368
Cow position: chr1:18241701-18241332 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 253
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 77, 32

Conread position: 8-376
Cow position: chr1:9381788-9381412 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 249
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 91, 189

Conread position: 8-424
Cow position: chr1:53364371-53364789 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 288
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 79, 64

Conread position: 8-471
Cow position: chr1:9259292-9259770 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 278

Conread position: 8-471
Cow position: chr1:29035102-29035566 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 314
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 101, 72

Conread position: 8-478
Cow position: chr1:21088227-21088724 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 332

Conread position: 8-596
Cow position: chr1:40575027-40575637 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 355

Conread position: 12-471
Cow position: chr1:20081115-20080674 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 70

Conread position: 18-228
Cow position: chr1:89426397-89426614 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 88, 168

Conread position: 18-256
Cow position: chr1:57568759-57569004 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 174
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 92, 137

Conread position: 18-261
Cow position: chr1:58336661-58336913 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 178
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 87, 0

Conread position: 18-263
Cow position: chr1:71561749-71561495 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 178
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 84, 0

Conread position: 18-300
Cow position: chr1:44044606-44044897 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 199
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 82, 0

Conread position: 18-314
Cow position: chr1:28711713-28712020 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 209
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 55, 0

Conread position: 18-333
Cow position: chr1:8555152-8555477 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 220
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 81, 306

Conread position: 18-348
Cow position: chr1:67287646-67287988 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 23

Conread position: 18-364
Cow position: chr1:76544712-76544355 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 0

Conread position: 18-379
Cow position: chr1:38416711-38417053 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 253
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 69, 89

Conread position: 18-393
Cow position: chr1:3385200-3384814 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 20

Conread position: 18-393
Cow position: chr1:30282877-30282490 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 306

Conread position: 18-396
Cow position: chr1:11291287-11290901 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 267
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 81, 22

Conread position: 18-459
Cow position: chr1:22843465-22843923 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 160

Conread position: 18-464
Cow position: chr1:94660499-94660954 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 45

Conread position: 18-465
Cow position: chr1:12061390-12060932 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 113

Conread position: 18-465
Cow position: chr1:20829734-20830172 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 298

Conread position: 18-465
Cow position: chr1:21999130-21998692 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 115

Conread position: 18-465
Cow position: chr1:30534194-30533740 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 246

Conread position: 18-465
Cow position: chr1:55777407-55777858 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 333

Conread position: 18-465
Cow position: chr1:69921611-69921153 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 213

Conread position: 18-471
Cow position: chr1:49973364-49972896 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 0

Conread position: 18-471
Cow position: chr1:59209326-59208860 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 0

Conread position: 18-471
Cow position: chr1:60340123-60340583 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 306

Conread position: 18-471
Cow position: chr1:74285966-74285502 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 0

Conread position: 18-471
Cow position: chr1:89769883-89769425 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 49

Conread position: 18-483
Cow position: chr1:33852109-33852574 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 228

Conread position: 18-484
Cow position: chr1:82912314-82911856 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 306

Conread position: 18-563
Cow position: chr1:5502792-5503368 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 22

Conread position: 18-563
Cow position: chr1:17035777-17035194 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 175

Conread position: 18-563
Cow position: chr1:25550785-25551365 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 249

Conread position: 18-563
Cow position: chr1:26518062-26517489 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 138

Conread position: 18-563
Cow position: chr1:29363121-29363695 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 367

Conread position: 18-563
Cow position: chr1:33551750-33552329 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 573

Conread position: 18-563
Cow position: chr1:56143508-56142944 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 47

Conread position: 18-563
Cow position: chr1:56193344-56192762 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 576

Conread position: 18-563
Cow position: chr1:62243816-62243253 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 64

Conread position: 18-563
Cow position: chr1:72984327-72984874 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 54

Conread position: 18-563
Cow position: chr1:85792502-85793081 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 303

Conread position: 18-563
Cow position: chr1:91892293-91891719 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 247

Conread position: 18-565
Cow position: chr1:28873904-28874474 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 212

Conread position: 18-565
Cow position: chr1:69403830-69404411 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 68

Conread position: 18-587
Cow position: chr1:91899841-91900451 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 311

Conread position: 18-588
Cow position: chr1:73070232-73069637 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 22

Conread position: 18-589
Cow position: chr1:62805357-62804740 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 595

Conread position: 18-589
Cow position: chr1:85779614-85779015 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 54

Conread position: 18-596
Cow position: chr1:56164372-56164973 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 317

Conread position: 18-598
Cow position: chr1:86547318-86546699 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 309

Conread position: 18-613
Cow position: chr1:57424017-57423406 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 311

Conread position: 19-471
Cow position: chr1:61310044-61310508 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 0

Conread position: 19-471
Cow position: chr1:99914248-99914713 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 0

Conread position: 19-563
Cow position: chr1:72186057-72185480 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 248

Conread position: 23-465
Cow position: chr1:55276205-55275752 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 304

Conread position: 23-549
Cow position: chr1:102781467-102780926 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 201

Conread position: 65-489
Cow position: chr1:55321202-55320769 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 159

Conread position: 100-554
Cow position: chr1:101861148-101860688 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 68

Conread position: 109-552
Cow position: chr1:99315199-99315621 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 85

Conread position: 109-558
Cow position: chr1:55156078-55155611 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 219

Conread position: 109-562
Cow position: chr1:77111140-77110672 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 120

Conread position: 109-563
Cow position: chr1:73198101-73197632 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 176

Conread position: 117-591
Cow position: chr1:76703354-76702865 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 312
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 137, 290

Conread position: 187-563
Cow position: chr1:16581501-16581124 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 250
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 34, 14

Conread position: 187-563
Cow position: chr1:16587077-16586700 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 251
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 34, 14

Conread position: 215-558
Cow position: chr1:58178073-58177732 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 243
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 94, 27

Conread position: 328-554
Cow position: chr1:43570240-43570019 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 153
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 65, 42

Show alignments to all cow chromosomes.