Cow genome map
Conread name: | Thy1-THY010019C10 |
Conread position: | 1-471 |
Cow position: | chr1:57662827-57663306 (view UCSC Genome Browser custom track) |
Alignm length: | 488 |
Alignm identity: | 332 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 265 |
Conread position: | 1-471 |
Cow position: | chr1:72038756-72038278 (view UCSC Genome Browser custom track) |
Alignm length: | 484 |
Alignm identity: | 344 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 82 |
Conread position: | 1-476 |
Cow position: | chr1:99019209-99018721 (view UCSC Genome Browser custom track) |
Alignm length: | 497 |
Alignm identity: | 345 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 44 |
Conread position: | 1-563 |
Cow position: | chr1:24652095-24652678 (view UCSC Genome Browser custom track) |
Alignm length: | 592 |
Alignm identity: | 413 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 25 |
Conread position: | 1-563 |
Cow position: | chr1:98659105-98658515 (view UCSC Genome Browser custom track) |
Alignm length: | 594 |
Alignm identity: | 414 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 272 |
Conread position: | 2-279 |
Cow position: | chr1:81863700-81863406 (view UCSC Genome Browser custom track) |
Alignm length: | 296 |
Alignm identity: | 202 |
Alignm E-value: | 4e-27 |
Alignm gaps (pig, cow): | 23, 191 |
Conread position: | 2-471 |
Cow position: | chr1:93855323-93855804 (view UCSC Genome Browser custom track) |
Alignm length: | 483 |
Alignm identity: | 338 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 327 |
Conread position: | 2-589 |
Cow position: | chr1:42737263-42737868 (view UCSC Genome Browser custom track) |
Alignm length: | 620 |
Alignm identity: | 427 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 331 |
Conread position: | 5-471 |
Cow position: | chr1:53199347-53199830 (view UCSC Genome Browser custom track) |
Alignm length: | 487 |
Alignm identity: | 336 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 159 |
Conread position: | 5-471 |
Cow position: | chr1:86595689-86595207 (view UCSC Genome Browser custom track) |
Alignm length: | 483 |
Alignm identity: | 332 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 0 |
Conread position: | 5-481 |
Cow position: | chr1:28278989-28279489 (view UCSC Genome Browser custom track) |
Alignm length: | 507 |
Alignm identity: | 329 |
Alignm E-value: | 1e-36 |
Alignm gaps (pig, cow): | 20, 129 |
Conread position: | 5-558 |
Cow position: | chr1:40683914-40683345 (view UCSC Genome Browser custom track) |
Alignm length: | 583 |
Alignm identity: | 403 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 77 |
Conread position: | 5-588 |
Cow position: | chr1:79111303-79111904 (view UCSC Genome Browser custom track) |
Alignm length: | 606 |
Alignm identity: | 424 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 107, 18 |
Conread position: | 6-554 |
Cow position: | chr1:31359229-31359794 (view UCSC Genome Browser custom track) |
Alignm length: | 580 |
Alignm identity: | 395 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 49 |
Conread position: | 7-471 |
Cow position: | chr1:31397504-31397973 (view UCSC Genome Browser custom track) |
Alignm length: | 478 |
Alignm identity: | 332 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 92, 284 |
Conread position: | 8-223 |
Cow position: | chr1:33896556-33896778 (view UCSC Genome Browser custom track) |
Alignm length: | 223 |
Alignm identity: | 151 |
Alignm E-value: | 7e-23 |
Alignm gaps (pig, cow): | 91, 0 |
Conread position: | 8-368 |
Cow position: | chr1:18241701-18241332 (view UCSC Genome Browser custom track) |
Alignm length: | 371 |
Alignm identity: | 253 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 77, 32 |
Conread position: | 8-376 |
Cow position: | chr1:9381788-9381412 (view UCSC Genome Browser custom track) |
Alignm length: | 379 |
Alignm identity: | 249 |
Alignm E-value: | 1e-37 |
Alignm gaps (pig, cow): | 91, 189 |
Conread position: | 8-424 |
Cow position: | chr1:53364371-53364789 (view UCSC Genome Browser custom track) |
Alignm length: | 429 |
Alignm identity: | 288 |
Alignm E-value: | 6.00036e-42 |
Alignm gaps (pig, cow): | 79, 64 |
Conread position: | 8-471 |
Cow position: | chr1:9259292-9259770 (view UCSC Genome Browser custom track) |
Alignm length: | 480 |
Alignm identity: | 326 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 94, 278 |
Conread position: | 8-471 |
Cow position: | chr1:29035102-29035566 (view UCSC Genome Browser custom track) |
Alignm length: | 477 |
Alignm identity: | 314 |
Alignm E-value: | 7.00649e-43 |
Alignm gaps (pig, cow): | 101, 72 |
Conread position: | 8-478 |
Cow position: | chr1:21088227-21088724 (view UCSC Genome Browser custom track) |
Alignm length: | 500 |
Alignm identity: | 345 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 91, 332 |
Conread position: | 8-596 |
Cow position: | chr1:40575027-40575637 (view UCSC Genome Browser custom track) |
Alignm length: | 615 |
Alignm identity: | 414 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 91, 355 |
Conread position: | 12-471 |
Cow position: | chr1:20081115-20080674 (view UCSC Genome Browser custom track) |
Alignm length: | 465 |
Alignm identity: | 334 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 70 |
Conread position: | 18-228 |
Cow position: | chr1:89426397-89426614 (view UCSC Genome Browser custom track) |
Alignm length: | 219 |
Alignm identity: | 156 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 88, 168 |
Conread position: | 18-256 |
Cow position: | chr1:57568759-57569004 (view UCSC Genome Browser custom track) |
Alignm length: | 249 |
Alignm identity: | 174 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 92, 137 |
Conread position: | 18-261 |
Cow position: | chr1:58336661-58336913 (view UCSC Genome Browser custom track) |
Alignm length: | 253 |
Alignm identity: | 178 |
Alignm E-value: | 8e-34 |
Alignm gaps (pig, cow): | 87, 0 |
Conread position: | 18-263 |
Cow position: | chr1:71561749-71561495 (view UCSC Genome Browser custom track) |
Alignm length: | 255 |
Alignm identity: | 178 |
Alignm E-value: | 2e-32 |
Alignm gaps (pig, cow): | 84, 0 |
Conread position: | 18-300 |
Cow position: | chr1:44044606-44044897 (view UCSC Genome Browser custom track) |
Alignm length: | 292 |
Alignm identity: | 199 |
Alignm E-value: | 9e-35 |
Alignm gaps (pig, cow): | 82, 0 |
Conread position: | 18-314 |
Cow position: | chr1:28711713-28712020 (view UCSC Genome Browser custom track) |
Alignm length: | 308 |
Alignm identity: | 209 |
Alignm E-value: | 3e-35 |
Alignm gaps (pig, cow): | 55, 0 |
Conread position: | 18-333 |
Cow position: | chr1:8555152-8555477 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 220 |
Alignm E-value: | 9e-35 |
Alignm gaps (pig, cow): | 81, 306 |
Conread position: | 18-348 |
Cow position: | chr1:67287646-67287988 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 83, 23 |
Conread position: | 18-364 |
Cow position: | chr1:76544712-76544355 (view UCSC Genome Browser custom track) |
Alignm length: | 358 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 87, 0 |
Conread position: | 18-379 |
Cow position: | chr1:38416711-38417053 (view UCSC Genome Browser custom track) |
Alignm length: | 363 |
Alignm identity: | 253 |
Alignm E-value: | 7.00649e-43 |
Alignm gaps (pig, cow): | 69, 89 |
Conread position: | 18-393 |
Cow position: | chr1:3385200-3384814 (view UCSC Genome Browser custom track) |
Alignm length: | 388 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 87, 20 |
Conread position: | 18-393 |
Cow position: | chr1:30282877-30282490 (view UCSC Genome Browser custom track) |
Alignm length: | 389 |
Alignm identity: | 271 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 81, 306 |
Conread position: | 18-396 |
Cow position: | chr1:11291287-11290901 (view UCSC Genome Browser custom track) |
Alignm length: | 392 |
Alignm identity: | 267 |
Alignm E-value: | 7.00649e-44 |
Alignm gaps (pig, cow): | 81, 22 |
Conread position: | 18-459 |
Cow position: | chr1:22843465-22843923 (view UCSC Genome Browser custom track) |
Alignm length: | 460 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 88, 160 |
Conread position: | 18-464 |
Cow position: | chr1:94660499-94660954 (view UCSC Genome Browser custom track) |
Alignm length: | 458 |
Alignm identity: | 337 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 86, 45 |
Conread position: | 18-465 |
Cow position: | chr1:12061390-12060932 (view UCSC Genome Browser custom track) |
Alignm length: | 463 |
Alignm identity: | 331 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 92, 113 |
Conread position: | 18-465 |
Cow position: | chr1:20829734-20830172 (view UCSC Genome Browser custom track) |
Alignm length: | 449 |
Alignm identity: | 306 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 219, 298 |
Conread position: | 18-465 |
Cow position: | chr1:21999130-21998692 (view UCSC Genome Browser custom track) |
Alignm length: | 457 |
Alignm identity: | 311 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 87, 115 |
Conread position: | 18-465 |
Cow position: | chr1:30534194-30533740 (view UCSC Genome Browser custom track) |
Alignm length: | 456 |
Alignm identity: | 325 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 87, 246 |
Conread position: | 18-465 |
Cow position: | chr1:55777407-55777858 (view UCSC Genome Browser custom track) |
Alignm length: | 457 |
Alignm identity: | 324 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 92, 333 |
Conread position: | 18-465 |
Cow position: | chr1:69921611-69921153 (view UCSC Genome Browser custom track) |
Alignm length: | 460 |
Alignm identity: | 329 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 87, 213 |
Conread position: | 18-471 |
Cow position: | chr1:49973364-49972896 (view UCSC Genome Browser custom track) |
Alignm length: | 469 |
Alignm identity: | 335 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 87, 0 |
Conread position: | 18-471 |
Cow position: | chr1:59209326-59208860 (view UCSC Genome Browser custom track) |
Alignm length: | 467 |
Alignm identity: | 321 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 81, 0 |
Conread position: | 18-471 |
Cow position: | chr1:60340123-60340583 (view UCSC Genome Browser custom track) |
Alignm length: | 464 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 84, 306 |
Conread position: | 18-471 |
Cow position: | chr1:74285966-74285502 (view UCSC Genome Browser custom track) |
Alignm length: | 465 |
Alignm identity: | 335 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 87, 0 |
Conread position: | 18-471 |
Cow position: | chr1:89769883-89769425 (view UCSC Genome Browser custom track) |
Alignm length: | 465 |
Alignm identity: | 312 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 124, 49 |
Conread position: | 18-483 |
Cow position: | chr1:33852109-33852574 (view UCSC Genome Browser custom track) |
Alignm length: | 479 |
Alignm identity: | 328 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 81, 228 |
Conread position: | 18-484 |
Cow position: | chr1:82912314-82911856 (view UCSC Genome Browser custom track) |
Alignm length: | 476 |
Alignm identity: | 323 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 81, 306 |
Conread position: | 18-563 |
Cow position: | chr1:5502792-5503368 (view UCSC Genome Browser custom track) |
Alignm length: | 580 |
Alignm identity: | 402 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 86, 22 |
Conread position: | 18-563 |
Cow position: | chr1:17035777-17035194 (view UCSC Genome Browser custom track) |
Alignm length: | 585 |
Alignm identity: | 392 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 81, 175 |
Conread position: | 18-563 |
Cow position: | chr1:25550785-25551365 (view UCSC Genome Browser custom track) |
Alignm length: | 584 |
Alignm identity: | 413 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 87, 249 |
Conread position: | 18-563 |
Cow position: | chr1:26518062-26517489 (view UCSC Genome Browser custom track) |
Alignm length: | 577 |
Alignm identity: | 409 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 87, 138 |
Conread position: | 18-563 |
Cow position: | chr1:29363121-29363695 (view UCSC Genome Browser custom track) |
Alignm length: | 579 |
Alignm identity: | 395 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 81, 367 |
Conread position: | 18-563 |
Cow position: | chr1:33551750-33552329 (view UCSC Genome Browser custom track) |
Alignm length: | 581 |
Alignm identity: | 413 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 87, 573 |
Conread position: | 18-563 |
Cow position: | chr1:56143508-56142944 (view UCSC Genome Browser custom track) |
Alignm length: | 569 |
Alignm identity: | 400 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 47 |
Conread position: | 18-563 |
Cow position: | chr1:56193344-56192762 (view UCSC Genome Browser custom track) |
Alignm length: | 584 |
Alignm identity: | 399 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 87, 576 |
Conread position: | 18-563 |
Cow position: | chr1:62243816-62243253 (view UCSC Genome Browser custom track) |
Alignm length: | 580 |
Alignm identity: | 409 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 87, 64 |
Conread position: | 18-563 |
Cow position: | chr1:72984327-72984874 (view UCSC Genome Browser custom track) |
Alignm length: | 572 |
Alignm identity: | 399 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 86, 54 |
Conread position: | 18-563 |
Cow position: | chr1:85792502-85793081 (view UCSC Genome Browser custom track) |
Alignm length: | 582 |
Alignm identity: | 391 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 81, 303 |
Conread position: | 18-563 |
Cow position: | chr1:91892293-91891719 (view UCSC Genome Browser custom track) |
Alignm length: | 579 |
Alignm identity: | 410 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 247 |
Conread position: | 18-565 |
Cow position: | chr1:28873904-28874474 (view UCSC Genome Browser custom track) |
Alignm length: | 580 |
Alignm identity: | 406 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 87, 212 |
Conread position: | 18-565 |
Cow position: | chr1:69403830-69404411 (view UCSC Genome Browser custom track) |
Alignm length: | 585 |
Alignm identity: | 406 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 87, 68 |
Conread position: | 18-587 |
Cow position: | chr1:91899841-91900451 (view UCSC Genome Browser custom track) |
Alignm length: | 613 |
Alignm identity: | 415 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 79, 311 |
Conread position: | 18-588 |
Cow position: | chr1:73070232-73069637 (view UCSC Genome Browser custom track) |
Alignm length: | 609 |
Alignm identity: | 414 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 22 |
Conread position: | 18-589 |
Cow position: | chr1:62805357-62804740 (view UCSC Genome Browser custom track) |
Alignm length: | 619 |
Alignm identity: | 430 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 87, 595 |
Conread position: | 18-589 |
Cow position: | chr1:85779614-85779015 (view UCSC Genome Browser custom track) |
Alignm length: | 606 |
Alignm identity: | 415 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 77, 54 |
Conread position: | 18-596 |
Cow position: | chr1:56164372-56164973 (view UCSC Genome Browser custom track) |
Alignm length: | 612 |
Alignm identity: | 403 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 81, 317 |
Conread position: | 18-598 |
Cow position: | chr1:86547318-86546699 (view UCSC Genome Browser custom track) |
Alignm length: | 621 |
Alignm identity: | 420 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 81, 309 |
Conread position: | 18-613 |
Cow position: | chr1:57424017-57423406 (view UCSC Genome Browser custom track) |
Alignm length: | 619 |
Alignm identity: | 405 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 82, 311 |
Conread position: | 19-471 |
Cow position: | chr1:61310044-61310508 (view UCSC Genome Browser custom track) |
Alignm length: | 465 |
Alignm identity: | 328 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 90, 0 |
Conread position: | 19-471 |
Cow position: | chr1:99914248-99914713 (view UCSC Genome Browser custom track) |
Alignm length: | 466 |
Alignm identity: | 330 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 86, 0 |
Conread position: | 19-563 |
Cow position: | chr1:72186057-72185480 (view UCSC Genome Browser custom track) |
Alignm length: | 580 |
Alignm identity: | 409 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 86, 248 |
Conread position: | 23-465 |
Cow position: | chr1:55276205-55275752 (view UCSC Genome Browser custom track) |
Alignm length: | 458 |
Alignm identity: | 319 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 76, 304 |
Conread position: | 23-549 |
Cow position: | chr1:102781467-102780926 (view UCSC Genome Browser custom track) |
Alignm length: | 547 |
Alignm identity: | 371 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 84, 201 |
Conread position: | 65-489 |
Cow position: | chr1:55321202-55320769 (view UCSC Genome Browser custom track) |
Alignm length: | 442 |
Alignm identity: | 305 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 159 |
Conread position: | 100-554 |
Cow position: | chr1:101861148-101860688 (view UCSC Genome Browser custom track) |
Alignm length: | 470 |
Alignm identity: | 321 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 237, 68 |
Conread position: | 109-552 |
Cow position: | chr1:99315199-99315621 (view UCSC Genome Browser custom track) |
Alignm length: | 457 |
Alignm identity: | 324 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 113, 85 |
Conread position: | 109-558 |
Cow position: | chr1:55156078-55155611 (view UCSC Genome Browser custom track) |
Alignm length: | 469 |
Alignm identity: | 349 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 207, 219 |
Conread position: | 109-562 |
Cow position: | chr1:77111140-77110672 (view UCSC Genome Browser custom track) |
Alignm length: | 475 |
Alignm identity: | 334 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 154, 120 |
Conread position: | 109-563 |
Cow position: | chr1:73198101-73197632 (view UCSC Genome Browser custom track) |
Alignm length: | 473 |
Alignm identity: | 346 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 110, 176 |
Conread position: | 117-591 |
Cow position: | chr1:76703354-76702865 (view UCSC Genome Browser custom track) |
Alignm length: | 493 |
Alignm identity: | 312 |
Alignm E-value: | 1e-38 |
Alignm gaps (pig, cow): | 137, 290 |
Conread position: | 187-563 |
Cow position: | chr1:16581501-16581124 (view UCSC Genome Browser custom track) |
Alignm length: | 386 |
Alignm identity: | 250 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 34, 14 |
Conread position: | 187-563 |
Cow position: | chr1:16587077-16586700 (view UCSC Genome Browser custom track) |
Alignm length: | 386 |
Alignm identity: | 251 |
Alignm E-value: | 2e-32 |
Alignm gaps (pig, cow): | 34, 14 |
Conread position: | 215-558 |
Cow position: | chr1:58178073-58177732 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 243 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 94, 27 |
Conread position: | 328-554 |
Cow position: | chr1:43570240-43570019 (view UCSC Genome Browser custom track) |
Alignm length: | 228 |
Alignm identity: | 153 |
Alignm E-value: | 7e-23 |
Alignm gaps (pig, cow): | 65, 42 |
Show alignments to all cow chromosomes.