Cow genome map
| Conread name: | Thy1-THY010019C10 |
| Conread position: | 2-246 |
| Cow position: | chr11:10091143-10091400 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 2-471 |
| Cow position: | chr11:24393784-24394261 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 219 |
| Conread position: | 2-471 |
| Cow position: | chr11:47759819-47759330 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 390 |
| Conread position: | 2-554 |
| Cow position: | chr11:4057012-4056446 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 356 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 23, 269 |
| Conread position: | 2-563 |
| Cow position: | chr11:19102031-19101431 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 594 |
| Conread position: | 5-270 |
| Cow position: | chr11:73477780-73478054 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 5-471 |
| Cow position: | chr11:17546635-17547110 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 36 |
| Conread position: | 5-471 |
| Cow position: | chr11:44518397-44517917 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 299 |
| Conread position: | 8-471 |
| Cow position: | chr11:28229281-28228818 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 139 |
| Conread position: | 8-582 |
| Cow position: | chr11:67846094-67845489 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 262 |
| Conread position: | 8-589 |
| Cow position: | chr11:67450969-67451585 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 284 |
| Conread position: | 8-596 |
| Cow position: | chr11:20733767-20733139 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 320 |
| Conread position: | 8-613 |
| Cow position: | chr11:52419865-52420491 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 242 |
| Conread position: | 9-471 |
| Cow position: | chr11:30123371-30122895 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 257 |
| Conread position: | 12-563 |
| Cow position: | chr11:28054131-28053580 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 182 |
| Conread position: | 17-483 |
| Cow position: | chr11:29232526-29232054 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 133 |
| Conread position: | 17-612 |
| Cow position: | chr11:31861387-31861992 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 42 |
| Conread position: | 18-234 |
| Cow position: | chr11:23877780-23878004 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 87, 25 |
| Conread position: | 18-250 |
| Cow position: | chr11:31874294-31874062 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 26, 22 |
| Conread position: | 18-263 |
| Cow position: | chr11:36743695-36743439 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 18-336 |
| Cow position: | chr11:15984110-15984446 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 230 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 84, 314 |
| Conread position: | 18-340 |
| Cow position: | chr11:21443765-21444089 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 92, 151 |
| Conread position: | 18-357 |
| Cow position: | chr11:12094052-12094399 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 243 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 89, 135 |
| Conread position: | 18-367 |
| Cow position: | chr11:1495604-1495248 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 248 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 87, 325 |
| Conread position: | 18-374 |
| Cow position: | chr11:5342437-5342068 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 197 |
| Conread position: | 18-465 |
| Cow position: | chr11:4269918-4269460 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 18-465 |
| Cow position: | chr11:12357932-12357472 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 213 |
| Conread position: | 18-465 |
| Cow position: | chr11:44252284-44252739 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 109 |
| Conread position: | 18-471 |
| Cow position: | chr11:19063588-19063125 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 265 |
| Conread position: | 18-471 |
| Cow position: | chr11:37476516-37476034 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 322 |
| Conread position: | 18-483 |
| Cow position: | chr11:9734188-9733715 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 327 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 67, 52 |
| Conread position: | 18-552 |
| Cow position: | chr11:1489657-1489116 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 32 |
| Conread position: | 18-554 |
| Cow position: | chr11:80473783-80473226 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 361 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 89, 117 |
| Conread position: | 18-558 |
| Cow position: | chr11:29668124-29667548 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 18-558 |
| Cow position: | chr11:43514148-43513577 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 18-563 |
| Cow position: | chr11:10847935-10848514 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 249 |
| Conread position: | 18-563 |
| Cow position: | chr11:17107201-17106620 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 307 |
| Conread position: | 18-563 |
| Cow position: | chr11:26124442-26123868 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 256 |
| Conread position: | 18-563 |
| Cow position: | chr11:26547995-26548587 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 305 |
| Conread position: | 18-563 |
| Cow position: | chr11:31926656-31927215 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 51 |
| Conread position: | 18-563 |
| Cow position: | chr11:58134878-58135456 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 22 |
| Conread position: | 18-563 |
| Cow position: | chr11:71330077-71330657 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 578 |
| Conread position: | 18-567 |
| Cow position: | chr11:3493479-3494060 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 180 |
| Conread position: | 18-581 |
| Cow position: | chr11:26070574-26069993 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 337 |
| Conread position: | 18-582 |
| Cow position: | chr11:9601848-9601246 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 184 |
| Conread position: | 18-588 |
| Cow position: | chr11:4034865-4034263 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 64 |
| Conread position: | 18-589 |
| Cow position: | chr11:38834951-38834351 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 19-252 |
| Cow position: | chr11:20510881-20511122 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 19-465 |
| Cow position: | chr11:53431573-53431107 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 27-301 |
| Cow position: | chr11:27669839-27669561 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 210 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 80, 123 |
| Conread position: | 34-563 |
| Cow position: | chr11:44582835-44582280 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 390 |
| Conread position: | 35-314 |
| Cow position: | chr11:21902593-21902311 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 75, 114 |
| Conread position: | 45-368 |
| Cow position: | chr11:77254216-77253895 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 64, 155 |
| Conread position: | 63-584 |
| Cow position: | chr11:18887386-18887918 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 145 |
| Conread position: | 143-556 |
| Cow position: | chr11:10869293-10869719 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 286 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 8, 243 |
| Conread position: | 154-554 |
| Cow position: | chr11:39804368-39804780 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 287 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 65, 55 |
| Conread position: | 231-554 |
| Cow position: | chr11:66729801-66730140 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 0 |
Show alignments to all cow chromosomes.