Cow genome map
| Conread name: | Thy1-THY010019C10 |
| Conread position: | 1-208 |
| Cow position: | chr16:30049550-30049771 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 24, 209 |
| Conread position: | 1-534 |
| Cow position: | chr16:25738751-25739277 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 110 |
| Conread position: | 1-554 |
| Cow position: | chr16:29034116-29034702 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-563 |
| Cow position: | chr16:25085682-25086278 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 223 |
| Conread position: | 1-565 |
| Cow position: | chr16:42736328-42735737 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 230 |
| Conread position: | 2-565 |
| Cow position: | chr16:23535823-23535223 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 2-567 |
| Cow position: | chr16:34530379-34530969 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 387 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 23, 442 |
| Conread position: | 5-465 |
| Cow position: | chr16:51084209-51084695 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 320 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 20, 146 |
| Conread position: | 6-223 |
| Cow position: | chr16:20201992-20202216 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 106, 9 |
| Conread position: | 8-471 |
| Cow position: | chr16:28170295-28169805 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 326 |
| Conread position: | 8-596 |
| Cow position: | chr16:5661920-5662536 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 128 |
| Conread position: | 11-346 |
| Cow position: | chr16:2238621-2238292 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 208, 95 |
| Conread position: | 17-471 |
| Cow position: | chr16:2483054-2482590 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 378 |
| Conread position: | 18-223 |
| Cow position: | chr16:28197591-28197375 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 18-280 |
| Cow position: | chr16:4305177-4304910 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 81, 112 |
| Conread position: | 18-297 |
| Cow position: | chr16:27733705-27733425 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 95, 126 |
| Conread position: | 18-426 |
| Cow position: | chr16:28471015-28470599 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 249 |
| Conread position: | 18-465 |
| Cow position: | chr16:1860308-1860754 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 196 |
| Conread position: | 18-465 |
| Cow position: | chr16:15493589-15494047 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 18-465 |
| Cow position: | chr16:25342055-25342501 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 313 |
| Conread position: | 18-465 |
| Cow position: | chr16:40296090-40295630 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 170 |
| Conread position: | 18-465 |
| Cow position: | chr16:43897189-43896731 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 18-469 |
| Cow position: | chr16:29047109-29047569 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 183 |
| Conread position: | 18-471 |
| Cow position: | chr16:2410880-2410419 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 378 |
| Conread position: | 18-471 |
| Cow position: | chr16:7676368-7675909 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 246 |
| Conread position: | 18-471 |
| Cow position: | chr16:23252348-23251888 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 150 |
| Conread position: | 18-471 |
| Cow position: | chr16:25188734-25189197 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 305 |
| Conread position: | 18-554 |
| Cow position: | chr16:5484817-5485381 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 249 |
| Conread position: | 18-558 |
| Cow position: | chr16:26663836-26664387 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 401 |
| Conread position: | 18-563 |
| Cow position: | chr16:12537838-12537292 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 347 |
| Conread position: | 18-563 |
| Cow position: | chr16:14665726-14665149 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 268 |
| Conread position: | 18-563 |
| Cow position: | chr16:25441713-25442291 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 378 |
| Conread position: | 18-567 |
| Cow position: | chr16:8816020-8815436 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 18-568 |
| Cow position: | chr16:25457377-25456811 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 306 |
| Conread position: | 19-477 |
| Cow position: | chr16:37455924-37455446 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 21 |
| Conread position: | 20-563 |
| Cow position: | chr16:15476930-15477503 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 17 |
| Conread position: | 23-478 |
| Cow position: | chr16:23670788-23671253 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 201 |
| Conread position: | 273-554 |
| Cow position: | chr16:23808684-23808975 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 64, 98 |
| Conread position: | 276-567 |
| Cow position: | chr16:4367461-4367760 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 63, 98 |
| Conread position: | 282-554 |
| Cow position: | chr16:47474608-47474907 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 220 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 295-572 |
| Cow position: | chr16:2238389-2238090 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 40, 270 |
Show alignments to all cow chromosomes.