Cow genome map
| Conread name: | Thy1-THY010019C10 |
| Conread position: | 1-367 |
| Cow position: | chr2:7903332-7903709 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 201 |
| Conread position: | 1-469 |
| Cow position: | chr2:15576547-15576065 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 151 |
| Conread position: | 1-471 |
| Cow position: | chr2:14823394-14823862 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 82 |
| Conread position: | 2-314 |
| Cow position: | chr2:45964824-45964500 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 23, 317 |
| Conread position: | 2-465 |
| Cow position: | chr2:81257466-81257938 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 328 |
| Conread position: | 2-477 |
| Cow position: | chr2:32655962-32656428 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 123 |
| Conread position: | 2-554 |
| Cow position: | chr2:44934660-44934109 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 335, 29 |
| Conread position: | 2-563 |
| Cow position: | chr2:28793540-28794132 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 382 |
| Conread position: | 2-563 |
| Cow position: | chr2:42670413-42669816 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 303 |
| Conread position: | 5-471 |
| Cow position: | chr2:10611340-10610870 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 26 |
| Conread position: | 5-554 |
| Cow position: | chr2:44991000-44990423 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 97 |
| Conread position: | 8-422 |
| Cow position: | chr2:46932183-46931756 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 49 |
| Conread position: | 8-440 |
| Cow position: | chr2:41150921-41151355 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 113 |
| Conread position: | 8-471 |
| Cow position: | chr2:364756-364292 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 318 |
| Conread position: | 8-549 |
| Cow position: | chr2:43961000-43961552 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 40 |
| Conread position: | 8-563 |
| Cow position: | chr2:2412494-2411905 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 185 |
| Conread position: | 8-566 |
| Cow position: | chr2:2087870-2087271 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 256 |
| Conread position: | 8-596 |
| Cow position: | chr2:211957-211362 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 191 |
| Conread position: | 12-551 |
| Cow position: | chr2:31298096-31298670 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 21 |
| Conread position: | 12-563 |
| Cow position: | chr2:13045398-13044822 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 100 |
| Conread position: | 12-563 |
| Cow position: | chr2:78762957-78763524 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 286 |
| Conread position: | 16-406 |
| Cow position: | chr2:14777533-14777150 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 164 |
| Conread position: | 18-204 |
| Cow position: | chr2:25888279-25888087 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 87, 184 |
| Conread position: | 18-234 |
| Cow position: | chr2:41686821-41687047 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 88, 187 |
| Conread position: | 18-250 |
| Cow position: | chr2:65938138-65937899 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 87, 23 |
| Conread position: | 18-255 |
| Cow position: | chr2:57335509-57335755 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 18-295 |
| Cow position: | chr2:80292639-80292362 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 86, 19 |
| Conread position: | 18-299 |
| Cow position: | chr2:64769379-64769087 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 212 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 89, 206 |
| Conread position: | 18-305 |
| Cow position: | chr2:49472560-49472858 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 18-353 |
| Cow position: | chr2:1113555-1113885 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 89, 28 |
| Conread position: | 18-464 |
| Cow position: | chr2:282377-281922 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 18-465 |
| Cow position: | chr2:2356128-2355670 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 305 |
| Conread position: | 18-465 |
| Cow position: | chr2:19011658-19012124 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 18-465 |
| Cow position: | chr2:59413372-59412923 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 308 |
| Conread position: | 18-466 |
| Cow position: | chr2:9958759-9958296 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 312 |
| Conread position: | 18-471 |
| Cow position: | chr2:3324247-3323784 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 164 |
| Conread position: | 18-471 |
| Cow position: | chr2:4402845-4402383 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 347 |
| Conread position: | 18-471 |
| Cow position: | chr2:24924875-24925341 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 250 |
| Conread position: | 18-471 |
| Cow position: | chr2:34051480-34051933 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 207 |
| Conread position: | 18-471 |
| Cow position: | chr2:36980693-36981155 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 206 |
| Conread position: | 18-471 |
| Cow position: | chr2:39421935-39422400 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 245 |
| Conread position: | 18-471 |
| Cow position: | chr2:41657488-41657952 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 305 |
| Conread position: | 18-471 |
| Cow position: | chr2:52616784-52617251 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 308 |
| Conread position: | 18-558 |
| Cow position: | chr2:53330070-53330651 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 18-563 |
| Cow position: | chr2:8118854-8119435 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 575 |
| Conread position: | 18-567 |
| Cow position: | chr2:11158806-11158226 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 213 |
| Conread position: | 18-589 |
| Cow position: | chr2:5904006-5903417 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 364 |
| Conread position: | 19-463 |
| Cow position: | chr2:32065767-32065316 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 277 |
| Conread position: | 19-553 |
| Cow position: | chr2:34564310-34563790 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 358 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 91, 21 |
| Conread position: | 19-563 |
| Cow position: | chr2:16900566-16901147 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 575 |
| Conread position: | 20-425 |
| Cow position: | chr2:52062859-52063295 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 20-465 |
| Cow position: | chr2:47811160-47811619 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 129 |
| Conread position: | 21-471 |
| Cow position: | chr2:47602950-47602489 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 19 |
| Conread position: | 23-484 |
| Cow position: | chr2:47038104-47037646 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 175 |
| Conread position: | 23-567 |
| Cow position: | chr2:50077918-50078467 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 61 |
| Conread position: | 26-310 |
| Cow position: | chr2:38373705-38373995 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 82, 187 |
| Conread position: | 34-319 |
| Cow position: | chr2:53662038-53662334 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 78, 53 |
| Conread position: | 36-471 |
| Cow position: | chr2:9908244-9908691 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 39 |
| Conread position: | 45-471 |
| Cow position: | chr2:28613993-28613558 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 179 |
| Conread position: | 56-464 |
| Cow position: | chr2:63291616-63291202 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 272 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 55, 76 |
| Conread position: | 58-471 |
| Cow position: | chr2:78742947-78743357 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 206 |
| Conread position: | 109-463 |
| Cow position: | chr2:64580476-64580130 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 245 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 226, 67 |
| Conread position: | 109-557 |
| Cow position: | chr2:33088535-33088968 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 39 |
| Conread position: | 110-554 |
| Cow position: | chr2:12516767-12516322 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 22 |
| Conread position: | 157-556 |
| Cow position: | chr2:36277930-36277517 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 13 |
| Conread position: | 162-548 |
| Cow position: | chr2:315628-315224 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 279 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 163, 24 |
Show alignments to all cow chromosomes.