Cow genome map
| Conread name: | Thy1-THY010019C10 |
| Conread position: | 1-471 |
| Cow position: | chr3:19720990-19720517 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 223 |
| Conread position: | 1-477 |
| Cow position: | chr3:12679164-12678676 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 202 |
| Conread position: | 2-541 |
| Cow position: | chr3:648823-648288 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 53 |
| Conread position: | 2-562 |
| Cow position: | chr3:49271424-49270876 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 45 |
| Conread position: | 4-393 |
| Cow position: | chr3:46680115-46680514 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 267 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 95, 131 |
| Conread position: | 4-590 |
| Cow position: | chr3:6783054-6783671 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 191 |
| Conread position: | 5-465 |
| Cow position: | chr3:36863776-36863305 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 284 |
| Conread position: | 7-471 |
| Cow position: | chr3:48842938-48843413 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 317 |
| Conread position: | 7-596 |
| Cow position: | chr3:30618239-30617609 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 8-465 |
| Cow position: | chr3:64651318-64651790 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 319 |
| Conread position: | 8-562 |
| Cow position: | chr3:32622353-32621767 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 193 |
| Conread position: | 8-596 |
| Cow position: | chr3:37969731-37970357 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 315 |
| Conread position: | 12-478 |
| Cow position: | chr3:19944924-19945405 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 30 |
| Conread position: | 13-345 |
| Cow position: | chr3:31420032-31420377 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 18-215 |
| Cow position: | chr3:7480529-7480322 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 18-215 |
| Cow position: | chr3:23213377-23213170 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 18-243 |
| Cow position: | chr3:83232543-83232314 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 100, 202 |
| Conread position: | 18-270 |
| Cow position: | chr3:24315168-24315430 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 83, 123 |
| Conread position: | 18-277 |
| Cow position: | chr3:41211034-41210766 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 18-292 |
| Cow position: | chr3:53411882-53412150 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 18-295 |
| Cow position: | chr3:49678502-49678792 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 83, 23 |
| Conread position: | 18-347 |
| Cow position: | chr3:58948315-58948663 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 18-350 |
| Cow position: | chr3:20381242-20381585 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 311 |
| Conread position: | 18-383 |
| Cow position: | chr3:18541441-18541066 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 18-465 |
| Cow position: | chr3:2869479-2869941 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 314 |
| Conread position: | 18-465 |
| Cow position: | chr3:2918162-2918620 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 305 |
| Conread position: | 18-465 |
| Cow position: | chr3:47177572-47177115 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 32 |
| Conread position: | 18-465 |
| Cow position: | chr3:59862074-59862534 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 22 |
| Conread position: | 18-471 |
| Cow position: | chr3:4286784-4287248 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 305 |
| Conread position: | 18-471 |
| Cow position: | chr3:19800477-19800013 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 305 |
| Conread position: | 18-471 |
| Cow position: | chr3:23289635-23289172 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 378 |
| Conread position: | 18-471 |
| Cow position: | chr3:27919122-27919586 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 305 |
| Conread position: | 18-471 |
| Cow position: | chr3:46503246-46503717 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 164 |
| Conread position: | 18-471 |
| Cow position: | chr3:49544511-49544046 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 193 |
| Conread position: | 18-471 |
| Cow position: | chr3:66620883-66621342 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 146 |
| Conread position: | 18-471 |
| Cow position: | chr3:75040461-75039998 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 249 |
| Conread position: | 18-477 |
| Cow position: | chr3:19939592-19940057 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 219 |
| Conread position: | 18-558 |
| Cow position: | chr3:3523721-3524294 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 278 |
| Conread position: | 18-558 |
| Cow position: | chr3:5994389-5993835 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 263 |
| Conread position: | 18-558 |
| Cow position: | chr3:18860112-18860662 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 305 |
| Conread position: | 18-558 |
| Cow position: | chr3:78026718-78026143 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 22 |
| Conread position: | 18-563 |
| Cow position: | chr3:18812208-18812772 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 191 |
| Conread position: | 18-563 |
| Cow position: | chr3:24445379-24444799 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 538 |
| Conread position: | 18-563 |
| Cow position: | chr3:30315263-30315823 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 201 |
| Conread position: | 18-563 |
| Cow position: | chr3:68699264-68698699 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 232 |
| Conread position: | 18-580 |
| Cow position: | chr3:19756249-19755644 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 18-582 |
| Cow position: | chr3:21182001-21181400 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 576 |
| Conread position: | 18-590 |
| Cow position: | chr3:46860602-46859986 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 326 |
| Conread position: | 18-590 |
| Cow position: | chr3:68873054-68872451 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 18-591 |
| Cow position: | chr3:5884243-5884843 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 280 |
| Conread position: | 19-216 |
| Cow position: | chr3:18462869-18462663 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 19-471 |
| Cow position: | chr3:40824092-40824552 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 19-471 |
| Cow position: | chr3:42447808-42448270 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 174 |
| Conread position: | 19-554 |
| Cow position: | chr3:48229770-48229210 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 22 |
| Conread position: | 20-228 |
| Cow position: | chr3:36118365-36118581 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 79, 20 |
| Conread position: | 20-563 |
| Cow position: | chr3:19879356-19879918 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 303 |
| Conread position: | 23-264 |
| Cow position: | chr3:56098922-56099181 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 32-471 |
| Cow position: | chr3:56397900-56398342 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 7 |
| Conread position: | 111-558 |
| Cow position: | chr3:24346770-24347219 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 353, 131 |
| Conread position: | 132-562 |
| Cow position: | chr3:56146144-56146577 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 71 |
| Conread position: | 250-596 |
| Cow position: | chr3:36118843-36119191 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 7, 24 |
| Conread position: | 303-554 |
| Cow position: | chr3:56635588-56635857 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 31, 108 |
| Conread position: | 324-554 |
| Cow position: | chr3:13476406-13476647 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 120, 215 |
Show alignments to all cow chromosomes.