Cow genome map
| Conread name: | Thy1-THY010019C10 |
| Conread position: | 1-554 |
| Cow position: | chr5:45700895-45701486 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 138 |
| Conread position: | 2-362 |
| Cow position: | chr5:46645546-46645915 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 246 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 23, 133 |
| Conread position: | 2-564 |
| Cow position: | chr5:46005271-46004676 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 588 |
| Conread position: | 2-568 |
| Cow position: | chr5:55628573-55629180 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 2-574 |
| Cow position: | chr5:3503534-3502917 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 405 |
| Conread position: | 8-471 |
| Cow position: | chr5:1227274-1227743 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 84 |
| Conread position: | 8-471 |
| Cow position: | chr5:27908681-27908203 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 32 |
| Conread position: | 8-596 |
| Cow position: | chr5:3965040-3965660 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 306 |
| Conread position: | 10-554 |
| Cow position: | chr5:32363568-32364105 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 27 |
| Conread position: | 12-465 |
| Cow position: | chr5:3786515-3786986 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 30 |
| Conread position: | 14-554 |
| Cow position: | chr5:41961126-41960571 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 66 |
| Conread position: | 18-210 |
| Cow position: | chr5:7274433-7274632 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 18-211 |
| Cow position: | chr5:44784312-44784111 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 82, 186 |
| Conread position: | 18-228 |
| Cow position: | chr5:241800-242015 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 82, 135 |
| Conread position: | 18-261 |
| Cow position: | chr5:46776671-46776924 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 84, 220 |
| Conread position: | 18-378 |
| Cow position: | chr5:27002611-27002975 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 255 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 17, 194 |
| Conread position: | 18-426 |
| Cow position: | chr5:35526403-35526830 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 139 |
| Conread position: | 18-464 |
| Cow position: | chr5:73488956-73488501 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 156 |
| Conread position: | 18-465 |
| Cow position: | chr5:1341430-1340971 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 183 |
| Conread position: | 18-465 |
| Cow position: | chr5:48808137-48807679 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 21 |
| Conread position: | 18-465 |
| Cow position: | chr5:59282921-59283376 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 146 |
| Conread position: | 18-470 |
| Cow position: | chr5:6588421-6587956 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 315 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 81, 318 |
| Conread position: | 18-471 |
| Cow position: | chr5:4757562-4757111 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 220 |
| Conread position: | 18-471 |
| Cow position: | chr5:10842777-10842320 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 243 |
| Conread position: | 18-471 |
| Cow position: | chr5:26078596-26078127 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 186 |
| Conread position: | 18-471 |
| Cow position: | chr5:30579931-30580404 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 381 |
| Conread position: | 18-471 |
| Cow position: | chr5:32773376-32773830 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 247 |
| Conread position: | 18-471 |
| Cow position: | chr5:35300700-35301164 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 126 |
| Conread position: | 18-471 |
| Cow position: | chr5:37732953-37733414 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 23 |
| Conread position: | 18-471 |
| Cow position: | chr5:42505605-42506070 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 306 |
| Conread position: | 18-472 |
| Cow position: | chr5:10775667-10775203 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 112 |
| Conread position: | 18-563 |
| Cow position: | chr5:2915051-2915627 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 371 |
| Conread position: | 18-563 |
| Cow position: | chr5:18121876-18121302 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 60 |
| Conread position: | 18-563 |
| Cow position: | chr5:24099272-24099841 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 22 |
| Conread position: | 18-565 |
| Cow position: | chr5:34697205-34697788 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 376 |
| Conread position: | 18-565 |
| Cow position: | chr5:46737972-46737406 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 175 |
| Conread position: | 18-567 |
| Cow position: | chr5:33187371-33187890 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 52 |
| Conread position: | 18-572 |
| Cow position: | chr5:57481937-57481346 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 531 |
| Conread position: | 18-574 |
| Cow position: | chr5:64781413-64780824 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 51 |
| Conread position: | 18-590 |
| Cow position: | chr5:4018599-4017988 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 311 |
| Conread position: | 18-590 |
| Cow position: | chr5:47830470-47829867 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 249 |
| Conread position: | 18-596 |
| Cow position: | chr5:31707152-31707780 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 318 |
| Conread position: | 19-257 |
| Cow position: | chr5:49591496-49591250 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 27, 21 |
| Conread position: | 19-318 |
| Cow position: | chr5:39246208-39245902 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 91, 33 |
| Conread position: | 19-471 |
| Cow position: | chr5:46807914-46808378 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 304 |
| Conread position: | 19-471 |
| Cow position: | chr5:58196618-58197081 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 304 |
| Conread position: | 20-465 |
| Cow position: | chr5:6154296-6153843 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 139 |
| Conread position: | 24-310 |
| Cow position: | chr5:49130163-49130447 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 86, 225 |
| Conread position: | 27-551 |
| Cow position: | chr5:23669509-23668960 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 24 |
| Conread position: | 32-563 |
| Cow position: | chr5:46664633-46665189 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 403 |
| Conread position: | 49-471 |
| Cow position: | chr5:13046084-13046522 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 109-554 |
| Cow position: | chr5:18885824-18885364 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 362, 62 |
| Conread position: | 343-595 |
| Cow position: | chr5:53703262-53703006 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 113, 132 |
Show alignments to all cow chromosomes.