Cow genome map
| Conread name: | Thy1-THY010019C10 |
| Conread position: | 1-318 |
| Cow position: | chr6:59918350-59918018 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 1-484 |
| Cow position: | chr6:28133656-28134128 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 326 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 110, 72 |
| Conread position: | 1-564 |
| Cow position: | chr6:33899511-33898930 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 8 |
| Conread position: | 2-481 |
| Cow position: | chr6:4259023-4258540 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 236 |
| Conread position: | 2-558 |
| Cow position: | chr6:35875992-35875416 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 528 |
| Conread position: | 5-228 |
| Cow position: | chr6:64716713-64716947 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 7-471 |
| Cow position: | chr6:43999793-44000267 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 157 |
| Conread position: | 8-471 |
| Cow position: | chr6:13316739-13316266 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 32 |
| Conread position: | 8-599 |
| Cow position: | chr6:13847758-13848380 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 32 |
| Conread position: | 12-415 |
| Cow position: | chr6:39438501-39438915 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 18-257 |
| Cow position: | chr6:7140719-7140473 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 81, 60 |
| Conread position: | 18-267 |
| Cow position: | chr6:16052622-16052883 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 18-268 |
| Cow position: | chr6:185726-185467 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 18-305 |
| Cow position: | chr6:30479844-30480140 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 94, 140 |
| Conread position: | 18-418 |
| Cow position: | chr6:44032535-44032940 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 83, 22 |
| Conread position: | 18-464 |
| Cow position: | chr6:44149814-44149359 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 263 |
| Conread position: | 18-465 |
| Cow position: | chr6:185040-184578 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 197 |
| Conread position: | 18-465 |
| Cow position: | chr6:28490826-28490369 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 165 |
| Conread position: | 18-465 |
| Cow position: | chr6:55542506-55542064 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 94 |
| Conread position: | 18-465 |
| Cow position: | chr6:68027664-68028115 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 270 |
| Conread position: | 18-471 |
| Cow position: | chr6:330723-330260 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 29 |
| Conread position: | 18-471 |
| Cow position: | chr6:1404850-1404380 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 311 |
| Conread position: | 18-471 |
| Cow position: | chr6:1410916-1410446 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 311 |
| Conread position: | 18-471 |
| Cow position: | chr6:3276632-3276165 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 18-471 |
| Cow position: | chr6:8202925-8203383 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 366 |
| Conread position: | 18-471 |
| Cow position: | chr6:13104800-13105266 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 123 |
| Conread position: | 18-471 |
| Cow position: | chr6:13310618-13310151 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 308 |
| Conread position: | 18-471 |
| Cow position: | chr6:20560364-20559897 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 253 |
| Conread position: | 18-471 |
| Cow position: | chr6:24239800-24240258 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 162 |
| Conread position: | 18-471 |
| Cow position: | chr6:26670123-26669659 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 252 |
| Conread position: | 18-471 |
| Cow position: | chr6:27170317-27170785 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 18-471 |
| Cow position: | chr6:40275830-40276291 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 180 |
| Conread position: | 18-471 |
| Cow position: | chr6:51086685-51087146 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 309 |
| Conread position: | 18-471 |
| Cow position: | chr6:51715282-51715731 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 290 |
| Conread position: | 18-471 |
| Cow position: | chr6:52693759-52694227 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 231 |
| Conread position: | 18-471 |
| Cow position: | chr6:65821231-65820767 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 305 |
| Conread position: | 18-476 |
| Cow position: | chr6:43618458-43618932 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 371 |
| Conread position: | 18-563 |
| Cow position: | chr6:2375441-2376002 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 180 |
| Conread position: | 18-563 |
| Cow position: | chr6:5949035-5948462 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 277 |
| Conread position: | 18-563 |
| Cow position: | chr6:12665577-12664998 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 412 |
| Conread position: | 18-563 |
| Cow position: | chr6:15140439-15139856 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 577 |
| Conread position: | 18-563 |
| Cow position: | chr6:17597576-17596991 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 320 |
| Conread position: | 18-563 |
| Cow position: | chr6:27529262-27528677 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 311 |
| Conread position: | 18-563 |
| Cow position: | chr6:41190064-41190616 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 272 |
| Conread position: | 18-565 |
| Cow position: | chr6:1821884-1821298 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 115 |
| Conread position: | 18-565 |
| Cow position: | chr6:21973399-21973995 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 251 |
| Conread position: | 18-565 |
| Cow position: | chr6:51730840-51731405 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 232 |
| Conread position: | 18-588 |
| Cow position: | chr6:40866575-40865978 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 162 |
| Conread position: | 19-465 |
| Cow position: | chr6:25214967-25215404 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 22 |
| Conread position: | 19-563 |
| Cow position: | chr6:15279068-15278498 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 300 |
| Conread position: | 19-568 |
| Cow position: | chr6:27471346-27471903 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 28 |
| Conread position: | 20-563 |
| Cow position: | chr6:34891380-34890805 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 569 |
| Conread position: | 20-565 |
| Cow position: | chr6:30274147-30273573 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 129 |
| Conread position: | 23-568 |
| Cow position: | chr6:65842372-65842939 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 211 |
| Conread position: | 32-596 |
| Cow position: | chr6:3150022-3150589 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 8 |
| Conread position: | 38-255 |
| Cow position: | chr6:25794051-25793825 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 46-596 |
| Cow position: | chr6:39910104-39910693 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 111-598 |
| Cow position: | chr6:11871801-11871299 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 85 |
| Conread position: | 123-548 |
| Cow position: | chr6:66193664-66193217 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 299 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 198, 132 |
| Conread position: | 385-557 |
| Cow position: | chr6:65915433-65915619 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 82, 39 |
Show alignments to all cow chromosomes.