Cow genome map

Conread name: Thy1-THY010019C10

Conread position: 1-240
Cow position: chrX:19874949-19875199 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 173
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 25, 0

Conread position: 1-471
Cow position: chrX:24134699-24134218 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 257

Conread position: 1-493
Cow position: chrX:6242035-6241542 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 139

Conread position: 1-552
Cow position: chrX:44388327-44388905 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 43

Conread position: 1-554
Cow position: chrX:13053563-13054161 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 175

Conread position: 1-563
Cow position: chrX:30366220-30365638 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 94

Conread position: 2-455
Cow position: chrX:28650984-28650528 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 7

Conread position: 2-465
Cow position: chrX:21830089-21830565 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 42

Conread position: 2-471
Cow position: chrX:12183474-12183978 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 171

Conread position: 2-558
Cow position: chrX:23277586-23278171 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 365

Conread position: 2-582
Cow position: chrX:41850639-41850039 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 267

Conread position: 2-603
Cow position: chrX:30171275-30170648 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 333

Conread position: 5-192
Cow position: chrX:20797535-20797733 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 140
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 5-334
Cow position: chrX:22513160-22512832 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 227
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 21, 129

Conread position: 5-562
Cow position: chrX:7031021-7031619 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 284

Conread position: 7-276
Cow position: chrX:26399614-26399334 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 193
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 24, 0

Conread position: 7-595
Cow position: chrX:15178858-15178246 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 317

Conread position: 8-256
Cow position: chrX:17051774-17052032 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 176
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 93, 0

Conread position: 8-263
Cow position: chrX:22525036-22524772 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 182
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 91, 0

Conread position: 8-471
Cow position: chrX:8588732-8589203 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 196

Conread position: 8-476
Cow position: chrX:12461384-12461859 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 241

Conread position: 8-563
Cow position: chrX:1834386-1834968 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 260

Conread position: 9-471
Cow position: chrX:23132541-23133009 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 209

Conread position: 10-471
Cow position: chrX:28585550-28586021 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 13

Conread position: 14-428
Cow position: chrX:28554184-28554609 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 258

Conread position: 18-277
Cow position: chrX:18610822-18610557 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 189
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 94, 221

Conread position: 18-284
Cow position: chrX:15599543-15599818 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 198
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 83, 0

Conread position: 18-331
Cow position: chrX:28757917-28757599 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 195
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 81, 180

Conread position: 18-418
Cow position: chrX:31186646-31186228 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 282
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 81, 222

Conread position: 18-465
Cow position: chrX:11464424-11463977 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 297
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 81, 52

Conread position: 18-466
Cow position: chrX:18953103-18952644 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 249

Conread position: 18-470
Cow position: chrX:5394432-5393965 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 307

Conread position: 18-471
Cow position: chrX:979173-979637 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 305

Conread position: 18-471
Cow position: chrX:2102763-2103226 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 231

Conread position: 18-471
Cow position: chrX:3375327-3374867 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 15

Conread position: 18-471
Cow position: chrX:5323145-5322686 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 25

Conread position: 18-471
Cow position: chrX:5335908-5335444 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 311

Conread position: 18-471
Cow position: chrX:5863972-5864435 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 195

Conread position: 18-471
Cow position: chrX:6872495-6872029 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 307

Conread position: 18-471
Cow position: chrX:7482210-7482673 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 314

Conread position: 18-471
Cow position: chrX:7752484-7752941 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 140

Conread position: 18-471
Cow position: chrX:8480228-8480692 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 19

Conread position: 18-471
Cow position: chrX:9125938-9126402 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 60

Conread position: 18-471
Cow position: chrX:11148758-11148295 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 274

Conread position: 18-471
Cow position: chrX:11422449-11422912 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 180

Conread position: 18-471
Cow position: chrX:12287825-12287362 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 270

Conread position: 18-471
Cow position: chrX:12315177-12314710 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 22

Conread position: 18-471
Cow position: chrX:12343520-12343977 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 64

Conread position: 18-471
Cow position: chrX:12703126-12702662 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 305

Conread position: 18-471
Cow position: chrX:13416852-13416391 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 64

Conread position: 18-471
Cow position: chrX:14460101-14460565 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 266

Conread position: 18-471
Cow position: chrX:15980379-15979917 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 142

Conread position: 18-471
Cow position: chrX:16276227-16276689 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 25

Conread position: 18-471
Cow position: chrX:17477847-17477383 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 305

Conread position: 18-471
Cow position: chrX:21059360-21059820 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 22

Conread position: 18-471
Cow position: chrX:22618721-22618268 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 313

Conread position: 18-471
Cow position: chrX:29096783-29097237 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 81

Conread position: 18-471
Cow position: chrX:29173185-29172721 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 305

Conread position: 18-471
Cow position: chrX:31493996-31494479 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 307

Conread position: 18-471
Cow position: chrX:38148171-38148637 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 0

Conread position: 18-476
Cow position: chrX:16811865-16811400 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 314

Conread position: 18-476
Cow position: chrX:29935173-29935643 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 127

Conread position: 18-493
Cow position: chrX:22488723-22489208 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 257

Conread position: 18-563
Cow position: chrX:1547557-1548134 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 26

Conread position: 18-563
Cow position: chrX:2482052-2481476 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 117

Conread position: 18-563
Cow position: chrX:5296970-5296401 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 8

Conread position: 18-563
Cow position: chrX:18659210-18658647 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 214

Conread position: 18-563
Cow position: chrX:26528556-26529122 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 361

Conread position: 18-563
Cow position: chrX:32066587-32066013 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 305

Conread position: 18-565
Cow position: chrX:971353-971933 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 382

Conread position: 18-565
Cow position: chrX:23040544-23039965 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 248

Conread position: 18-567
Cow position: chrX:321046-321621 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 247

Conread position: 18-580
Cow position: chrX:4796896-4797466 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 370

Conread position: 18-587
Cow position: chrX:3084548-3083958 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 312

Conread position: 18-590
Cow position: chrX:2576999-2577609 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 309

Conread position: 18-590
Cow position: chrX:37812740-37813336 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 309

Conread position: 18-596
Cow position: chrX:28561311-28560704 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 312

Conread position: 19-378
Cow position: chrX:20315483-20315115 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 245
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 83, 277

Conread position: 19-464
Cow position: chrX:30183339-30182905 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 116

Conread position: 19-465
Cow position: chrX:16699884-16700354 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 19-467
Cow position: chrX:29910846-29910391 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 121

Conread position: 19-470
Cow position: chrX:5283198-5282738 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 312
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 83, 278

Conread position: 19-471
Cow position: chrX:12353819-12354276 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 220

Conread position: 19-563
Cow position: chrX:23389938-23389364 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 375

Conread position: 19-588
Cow position: chrX:27987247-27986649 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 54

Conread position: 19-591
Cow position: chrX:35530441-35531040 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 307

Conread position: 20-416
Cow position: chrX:2604627-2605042 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 308

Conread position: 23-465
Cow position: chrX:24324998-24324536 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 197

Conread position: 46-471
Cow position: chrX:30011604-30012040 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 94

Conread position: 117-549
Cow position: chrX:34837680-34837259 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 270
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 252, 55

Conread position: 130-554
Cow position: chrX:34219009-34219448 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 76

Conread position: 239-551
Cow position: chrX:31053857-31053555 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 217
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 194, 79

Show alignments to all cow chromosomes.