Cow genome map

Conread name: Thy1-THY010022H12

Conread position: 1-194
Cow position: chr27:9989318-9989510 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 149
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 96, 37

Conread position: 1-283
Cow position: chr27:26330495-26330224 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 211
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 96, 134

Conread position: 2-188
Cow position: chr27:26849144-26849325 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 136
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 77, 0

Conread position: 2-194
Cow position: chr27:8187394-8187205 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 148
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 144, 0

Conread position: 2-194
Cow position: chr27:27728924-27729123 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 151
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 19, 35

Conread position: 2-284
Cow position: chr27:25800649-25800920 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 207
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 98, 85

Conread position: 2-288
Cow position: chr27:3650043-3649769 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 148

Conread position: 3-194
Cow position: chr27:16045290-16045098 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 145
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 94, 147

Conread position: 3-215
Cow position: chr27:10324369-10324581 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 157
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 96, 147

Conread position: 3-297
Cow position: chr27:12173497-12173210 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 204
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 78, 144

Conread position: 4-138
Cow position: chr27:5853307-5853169 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 86, 0

Conread position: 4-176
Cow position: chr27:27017376-27017205 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 142
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 87, 34

Conread position: 4-185
Cow position: chr27:19487424-19487607 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 141
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 75, 147

Conread position: 4-194
Cow position: chr27:1030994-1031185 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 143
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 93, 134

Conread position: 4-194
Cow position: chr27:10383990-10383800 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 87, 75

Conread position: 4-194
Cow position: chr27:13844153-13844344 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 150
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 87, 139

Conread position: 4-194
Cow position: chr27:24055242-24055058 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 141
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 34, 16

Conread position: 4-206
Cow position: chr27:15272514-15272719 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 161
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 87, 148

Conread position: 4-212
Cow position: chr27:12277668-12277456 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 157
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 57, 154

Conread position: 4-214
Cow position: chr27:13409555-13409345 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 168
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 87, 146

Conread position: 4-224
Cow position: chr27:11434722-11434506 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 162
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 90, 37

Conread position: 4-252
Cow position: chr27:723915-723678 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 188
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 82, 146

Conread position: 4-256
Cow position: chr27:28907675-28907912 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 185
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 241, 18

Conread position: 4-271
Cow position: chr27:2936382-2936130 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 196
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 81, 24

Conread position: 4-275
Cow position: chr27:30783472-30783203 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 203
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 42, 153

Conread position: 4-279
Cow position: chr27:9333227-9332965 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 211
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 93, 146

Conread position: 4-282
Cow position: chr27:1081616-1081869 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 196
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 53, 0

Conread position: 4-282
Cow position: chr27:29811861-29811596 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 208
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 93, 30

Conread position: 4-283
Cow position: chr27:1189216-1188956 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 196
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 86, 45

Conread position: 4-284
Cow position: chr27:13182730-13182992 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 0

Conread position: 4-284
Cow position: chr27:30306706-30306977 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 207
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 86, 149

Conread position: 4-285
Cow position: chr27:4982920-4982660 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 210
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 270, 50

Conread position: 4-286
Cow position: chr27:19523150-19523420 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 203
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 87, 145

Conread position: 4-287
Cow position: chr27:344370-344642 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 209
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 93, 146

Conread position: 4-287
Cow position: chr27:2332060-2331791 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 208
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 93, 11

Conread position: 4-287
Cow position: chr27:3653140-3653412 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 210
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 87, 143

Conread position: 4-287
Cow position: chr27:8201496-8201223 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 206
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 64, 147

Conread position: 4-287
Cow position: chr27:15033332-15033603 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 20

Conread position: 4-287
Cow position: chr27:15871772-15872035 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 214
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 110, 87

Conread position: 4-287
Cow position: chr27:19931997-19932278 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 207
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 87, 119

Conread position: 4-287
Cow position: chr27:20810976-20810704 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 209
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 84, 140

Conread position: 4-287
Cow position: chr27:25784204-25784471 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 145

Conread position: 4-287
Cow position: chr27:27291953-27291681 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 212
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 83, 140

Conread position: 4-287
Cow position: chr27:30583351-30583613 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 203
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 10, 0

Conread position: 4-288
Cow position: chr27:165360-165631 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 209
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 82, 137

Conread position: 4-288
Cow position: chr27:791486-791758 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 212
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 82, 146

Conread position: 4-288
Cow position: chr27:1521234-1520968 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 210
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 93, 146

Conread position: 4-288
Cow position: chr27:2001404-2001133 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 212
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 93, 18

Conread position: 4-288
Cow position: chr27:8959457-8959728 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 212
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 93, 75

Conread position: 4-288
Cow position: chr27:9970731-9970459 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 147

Conread position: 4-288
Cow position: chr27:10579503-10579235 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 211
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 82, 136

Conread position: 4-288
Cow position: chr27:12006708-12006436 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 146

Conread position: 4-288
Cow position: chr27:13353865-13353594 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 210
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 93, 20

Conread position: 4-288
Cow position: chr27:15866747-15867013 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 205
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 58, 81

Conread position: 4-288
Cow position: chr27:16030837-16031109 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 212
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 93, 146

Conread position: 4-288
Cow position: chr27:21452006-21451731 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 210
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 87, 63

Conread position: 4-288
Cow position: chr27:22797099-22797371 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 146

Conread position: 4-288
Cow position: chr27:26785372-26785104 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 211
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 75, 24

Conread position: 4-288
Cow position: chr27:27557358-27557090 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 214
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 127, 73

Conread position: 4-288
Cow position: chr27:29035822-29036094 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 212
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 82, 146

Conread position: 4-293
Cow position: chr27:9090202-9089923 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 222
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 70, 152

Conread position: 4-294
Cow position: chr27:13317115-13316842 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 218
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 81, 147

Conread position: 4-299
Cow position: chr27:27053931-27054218 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 225
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 87, 156

Conread position: 4-300
Cow position: chr27:14859883-14859603 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 203
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 78, 137

Conread position: 4-304
Cow position: chr27:25791979-25792273 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 224
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 80, 30

Conread position: 4-307
Cow position: chr27:19300006-19300297 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 220
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 93, 146

Conread position: 4-318
Cow position: chr27:13422604-13422910 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 146

Conread position: 5-236
Cow position: chr27:11349576-11349811 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 170
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 144, 77

Conread position: 5-287
Cow position: chr27:3990242-3990512 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 208
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 79, 137

Conread position: 5-299
Cow position: chr27:24295701-24295986 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 222
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 92, 130

Conread position: 5-300
Cow position: chr27:18954601-18954320 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 213
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 78, 149

Conread position: 5-305
Cow position: chr27:11490179-11489899 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 36

Conread position: 6-273
Cow position: chr27:8262397-8262140 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 200
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 87, 145

Conread position: 6-293
Cow position: chr27:25112724-25112443 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 213
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 80, 154

Conread position: 10-186
Cow position: chr27:5423766-5423594 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 130
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 72, 30

Conread position: 11-288
Cow position: chr27:14297760-14297495 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 202
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 77, 139

Conread position: 12-203
Cow position: chr27:27742771-27742574 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 142
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 81, 141

Conread position: 14-186
Cow position: chr27:18943441-18943264 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 133
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 68, 136

Conread position: 16-299
Cow position: chr27:1536718-1536447 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 206
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 75, 136

Conread position: 17-288
Cow position: chr27:27192803-27193060 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 197
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 68, 28

Conread position: 18-194
Cow position: chr27:16037421-16037597 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 75, 65

Conread position: 22-303
Cow position: chr27:816221-816491 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 129

Conread position: 35-216
Cow position: chr27:2848907-2849084 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 132
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 41, 26

Conread position: 45-300
Cow position: chr27:24562151-24562406 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 189
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 38, 21

Conread position: 47-287
Cow position: chr27:1502027-1501802 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 170
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 43, 101

Conread position: 47-293
Cow position: chr27:4824335-4824106 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 174
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 33, 57

Show alignments to all cow chromosomes.