Cow genome map

Conread name: Thy1-THY010032D09

Conread position: 1-174
Cow position: chr1:16216602-16216428 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 140
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 62, 55

Conread position: 1-197
Cow position: chr1:71442785-71442980 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 136
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 124, 0

Conread position: 1-205
Cow position: chr1:67326853-67326659 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 150
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 108, 12

Conread position: 1-207
Cow position: chr1:12061139-12060932 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 155
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 79, 97

Conread position: 1-207
Cow position: chr1:55777657-55777858 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 155
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 83, 0

Conread position: 1-207
Cow position: chr1:69921361-69921153 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 152
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 79, 0

Conread position: 1-212
Cow position: chr1:88269161-88268949 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 163
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 81, 14

Conread position: 1-213
Cow position: chr1:49973112-49972896 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 157
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 79, 0

Conread position: 1-213
Cow position: chr1:52358185-52357972 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 164
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 79, 55

Conread position: 1-213
Cow position: chr1:74285716-74285502 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 156
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 79, 0

Conread position: 1-310
Cow position: chr1:84226880-84227199 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 228
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 74, 252

Conread position: 1-423
Cow position: chr1:81777507-81777955 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 289
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 80, 0

Conread position: 1-474
Cow position: chr1:20080870-20080396 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 336
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 195, 49

Conread position: 1-582
Cow position: chr1:86595421-86594798 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 283

Conread position: 1-618
Cow position: chr1:40575289-40575935 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 93

Conread position: 1-621
Cow position: chr1:29039113-29039770 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 415

Conread position: 1-640
Cow position: chr1:40511935-40511265 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 38

Conread position: 1-684
Cow position: chr1:26517814-26517083 (view UCSC Genome Browser custom track)
Alignm length: 732
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 0

Conread position: 1-731
Cow position: chr1:22619565-22618820 (view UCSC Genome Browser custom track)
Alignm length: 758
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 84

Conread position: 1-753
Cow position: chr1:85792752-85793556 (view UCSC Genome Browser custom track)
Alignm length: 806
Alignm identity: 550
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 63

Conread position: 1-771
Cow position: chr1:17035513-17034702 (view UCSC Genome Browser custom track)
Alignm length: 813
Alignm identity: 554
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 357

Conread position: 1-771
Cow position: chr1:33852361-33853162 (view UCSC Genome Browser custom track)
Alignm length: 813
Alignm identity: 556
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 57

Conread position: 1-771
Cow position: chr1:39544865-39545677 (view UCSC Genome Browser custom track)
Alignm length: 818
Alignm identity: 556
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 63

Conread position: 1-771
Cow position: chr1:67834054-67833240 (view UCSC Genome Browser custom track)
Alignm length: 825
Alignm identity: 546
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 79

Conread position: 1-771
Cow position: chr1:80358097-80357269 (view UCSC Genome Browser custom track)
Alignm length: 835
Alignm identity: 574
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 63

Conread position: 1-771
Cow position: chr1:91892046-91891228 (view UCSC Genome Browser custom track)
Alignm length: 823
Alignm identity: 580
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 21

Conread position: 1-772
Cow position: chr1:55155928-55155129 (view UCSC Genome Browser custom track)
Alignm length: 809
Alignm identity: 583
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 62

Conread position: 1-772
Cow position: chr1:72185809-72184983 (view UCSC Genome Browser custom track)
Alignm length: 829
Alignm identity: 563
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 655

Conread position: 1-773
Cow position: chr1:3934185-3933365 (view UCSC Genome Browser custom track)
Alignm length: 824
Alignm identity: 579
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 325

Conread position: 1-773
Cow position: chr1:5503041-5503858 (view UCSC Genome Browser custom track)
Alignm length: 819
Alignm identity: 565
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 610

Conread position: 1-773
Cow position: chr1:24652351-24653160 (view UCSC Genome Browser custom track)
Alignm length: 821
Alignm identity: 578
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 55

Conread position: 1-773
Cow position: chr1:25551034-25551861 (view UCSC Genome Browser custom track)
Alignm length: 834
Alignm identity: 584
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 124

Conread position: 1-773
Cow position: chr1:32566849-32566039 (view UCSC Genome Browser custom track)
Alignm length: 827
Alignm identity: 575
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 125

Conread position: 1-773
Cow position: chr1:33552000-33552831 (view UCSC Genome Browser custom track)
Alignm length: 833
Alignm identity: 579
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 763

Conread position: 1-773
Cow position: chr1:33713142-33713976 (view UCSC Genome Browser custom track)
Alignm length: 835
Alignm identity: 585
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 0

Conread position: 1-773
Cow position: chr1:34693757-34694580 (view UCSC Genome Browser custom track)
Alignm length: 827
Alignm identity: 571
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 84

Conread position: 1-773
Cow position: chr1:38419744-38420536 (view UCSC Genome Browser custom track)
Alignm length: 820
Alignm identity: 551
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 130

Conread position: 1-773
Cow position: chr1:58178034-58177256 (view UCSC Genome Browser custom track)
Alignm length: 807
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 113

Conread position: 1-773
Cow position: chr1:62805098-62804283 (view UCSC Genome Browser custom track)
Alignm length: 823
Alignm identity: 585
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 327

Conread position: 1-773
Cow position: chr1:63604699-63603876 (view UCSC Genome Browser custom track)
Alignm length: 824
Alignm identity: 572
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 0

Conread position: 1-773
Cow position: chr1:65387393-65388207 (view UCSC Genome Browser custom track)
Alignm length: 818
Alignm identity: 574
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 128

Conread position: 1-773
Cow position: chr1:69404079-69404895 (view UCSC Genome Browser custom track)
Alignm length: 826
Alignm identity: 569
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 120

Conread position: 1-773
Cow position: chr1:72081849-72082648 (view UCSC Genome Browser custom track)
Alignm length: 812
Alignm identity: 561
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 349

Conread position: 1-773
Cow position: chr1:72992593-72993382 (view UCSC Genome Browser custom track)
Alignm length: 804
Alignm identity: 552
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 110

Conread position: 1-773
Cow position: chr1:79455881-79455060 (view UCSC Genome Browser custom track)
Alignm length: 823
Alignm identity: 575
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 291

Conread position: 1-773
Cow position: chr1:85779373-85778557 (view UCSC Genome Browser custom track)
Alignm length: 829
Alignm identity: 569
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 327

Conread position: 1-773
Cow position: chr1:86611215-86612001 (view UCSC Genome Browser custom track)
Alignm length: 811
Alignm identity: 550
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 30

Conread position: 1-773
Cow position: chr1:88131859-88132671 (view UCSC Genome Browser custom track)
Alignm length: 825
Alignm identity: 568
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 95

Conread position: 1-773
Cow position: chr1:94660747-94661566 (view UCSC Genome Browser custom track)
Alignm length: 820
Alignm identity: 566
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 0

Conread position: 1-773
Cow position: chr1:99914499-99915327 (view UCSC Genome Browser custom track)
Alignm length: 837
Alignm identity: 576
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 642

Conread position: 1-773
Cow position: chr1:102433968-102433139 (view UCSC Genome Browser custom track)
Alignm length: 831
Alignm identity: 558
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 101

Conread position: 1-773
Cow position: chr1:102781225-102780444 (view UCSC Genome Browser custom track)
Alignm length: 802
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 20

Conread position: 1-774
Cow position: chr1:31365025-31364207 (view UCSC Genome Browser custom track)
Alignm length: 820
Alignm identity: 555
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 573

Conread position: 2-454
Cow position: chr1:91446536-91446999 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 273

Conread position: 2-773
Cow position: chr1:56193093-56192265 (view UCSC Genome Browser custom track)
Alignm length: 830
Alignm identity: 561
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 341

Conread position: 6-460
Cow position: chr1:27178396-27177935 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 326
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 199, 55

Conread position: 7-729
Cow position: chr1:16581417-16580709 (view UCSC Genome Browser custom track)
Alignm length: 737
Alignm identity: 454
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 71, 41

Conread position: 7-729
Cow position: chr1:16586993-16586284 (view UCSC Genome Browser custom track)
Alignm length: 739
Alignm identity: 458
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 71, 41

Conread position: 8-485
Cow position: chr1:57697080-57696571 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 328

Conread position: 8-554
Cow position: chr1:20525559-20526147 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 17

Conread position: 8-770
Cow position: chr1:69767660-69768471 (view UCSC Genome Browser custom track)
Alignm length: 816
Alignm identity: 556
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 17

Conread position: 8-771
Cow position: chr1:40056186-40056998 (view UCSC Genome Browser custom track)
Alignm length: 819
Alignm identity: 559
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 17

Conread position: 8-771
Cow position: chr1:55275947-55275139 (view UCSC Genome Browser custom track)
Alignm length: 818
Alignm identity: 555
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 17

Conread position: 8-771
Cow position: chr1:91900105-91900915 (view UCSC Genome Browser custom track)
Alignm length: 813
Alignm identity: 563
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 7

Conread position: 9-356
Cow position: chr1:77160730-77160377 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 304

Conread position: 9-511
Cow position: chr1:89481929-89482441 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 363
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 216, 12

Conread position: 9-528
Cow position: chr1:31359490-31360027 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 52

Conread position: 15-665
Cow position: chr1:56143251-56142556 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 21-768
Cow position: chr1:22905867-22906635 (view UCSC Genome Browser custom track)
Alignm length: 790
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 11

Conread position: 27-773
Cow position: chr1:28874180-28874964 (view UCSC Genome Browser custom track)
Alignm length: 797
Alignm identity: 565
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 86

Conread position: 43-564
Cow position: chr1:78923343-78923897 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 255

Conread position: 67-773
Cow position: chr1:82923015-82922271 (view UCSC Genome Browser custom track)
Alignm length: 747
Alignm identity: 532
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 677

Conread position: 77-773
Cow position: chr1:72984634-72985344 (view UCSC Genome Browser custom track)
Alignm length: 729
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 48

Conread position: 127-412
Cow position: chr1:3384743-3384440 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 220
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 85, 39

Conread position: 157-771
Cow position: chr1:71561496-71560852 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 0

Conread position: 217-554
Cow position: chr1:80445465-80445819 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 22

Conread position: 217-771
Cow position: chr1:20830209-20830785 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 22

Conread position: 223-730
Cow position: chr1:81862664-81862134 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 511

Conread position: 223-769
Cow position: chr1:59207760-59207188 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 46

Conread position: 223-771
Cow position: chr1:67002473-67003046 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 286

Conread position: 223-773
Cow position: chr1:30074190-30074765 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 92

Conread position: 225-530
Cow position: chr1:67316135-67316432 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 225
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 148, 40

Conread position: 226-773
Cow position: chr1:89494887-89494335 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 366
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 119, 13

Conread position: 230-527
Cow position: chr1:21998091-21997776 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 220
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 18, 181

Conread position: 230-630
Cow position: chr1:22345331-22345745 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 9

Conread position: 231-618
Cow position: chr1:61590858-61590468 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 276
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 10, 36

Conread position: 237-460
Cow position: chr1:45018302-45018067 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 169
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 126, 10

Conread position: 237-773
Cow position: chr1:76095726-76095198 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 7

Conread position: 239-772
Cow position: chr1:57746057-57745503 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 7

Conread position: 250-771
Cow position: chr1:82565459-82565999 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 462

Conread position: 263-773
Cow position: chr1:89769178-89768647 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 416

Conread position: 370-773
Cow position: chr1:39107060-39107471 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 92

Conread position: 411-773
Cow position: chr1:72112529-72112901 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 0

Show alignments to all cow chromosomes.