Cow genome map
| Conread name: | Thy1-THY010032D09 |
| Conread position: | 1-207 |
| Cow position: | chr11:19071480-19071272 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-207 |
| Cow position: | chr11:44252531-44252739 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-207 |
| Cow position: | chr11:53431316-53431107 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 1-210 |
| Cow position: | chr11:77472849-77473061 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 67, 44 |
| Conread position: | 1-213 |
| Cow position: | chr11:15898257-15898042 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 79, 201 |
| Conread position: | 1-366 |
| Cow position: | chr11:74424330-74424720 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 114 |
| Conread position: | 1-443 |
| Cow position: | chr11:4269668-4269182 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-469 |
| Cow position: | chr11:44156513-44156017 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 125 |
| Conread position: | 1-525 |
| Cow position: | chr11:31539866-31540408 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 267 |
| Conread position: | 1-585 |
| Cow position: | chr11:80473532-80472929 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 53 |
| Conread position: | 1-618 |
| Cow position: | chr11:11988869-11989526 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 94 |
| Conread position: | 1-618 |
| Cow position: | chr11:71330329-71330996 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-682 |
| Cow position: | chr11:32685630-32686324 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 7 |
| Conread position: | 1-717 |
| Cow position: | chr11:58135130-58135889 (view UCSC Genome Browser custom track) |
| Alignm length: | 766 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 563 |
| Conread position: | 1-730 |
| Cow position: | chr11:9156417-9155644 (view UCSC Genome Browser custom track) |
| Alignm length: | 783 |
| Alignm identity: | 541 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 59 |
| Conread position: | 1-731 |
| Cow position: | chr11:66729829-66730599 (view UCSC Genome Browser custom track) |
| Alignm length: | 773 |
| Alignm identity: | 536 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 697 |
| Conread position: | 1-769 |
| Cow position: | chr11:9733944-9733130 (view UCSC Genome Browser custom track) |
| Alignm length: | 819 |
| Alignm identity: | 553 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 15 |
| Conread position: | 1-770 |
| Cow position: | chr11:43513898-43513076 (view UCSC Genome Browser custom track) |
| Alignm length: | 826 |
| Alignm identity: | 555 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 485 |
| Conread position: | 1-771 |
| Cow position: | chr11:17106949-17106134 (view UCSC Genome Browser custom track) |
| Alignm length: | 824 |
| Alignm identity: | 571 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 63 |
| Conread position: | 1-771 |
| Cow position: | chr11:17546897-17547711 (view UCSC Genome Browser custom track) |
| Alignm length: | 818 |
| Alignm identity: | 559 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 52 |
| Conread position: | 1-771 |
| Cow position: | chr11:20733502-20732679 (view UCSC Genome Browser custom track) |
| Alignm length: | 828 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 59 |
| Conread position: | 1-771 |
| Cow position: | chr11:44518130-44517311 (view UCSC Genome Browser custom track) |
| Alignm length: | 824 |
| Alignm identity: | 564 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 34 |
| Conread position: | 1-772 |
| Cow position: | chr11:72310298-72309484 (view UCSC Genome Browser custom track) |
| Alignm length: | 820 |
| Alignm identity: | 566 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 24 |
| Conread position: | 1-773 |
| Cow position: | chr11:10848184-10848994 (view UCSC Genome Browser custom track) |
| Alignm length: | 822 |
| Alignm identity: | 575 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 507 |
| Conread position: | 1-773 |
| Cow position: | chr11:12357681-12356845 (view UCSC Genome Browser custom track) |
| Alignm length: | 837 |
| Alignm identity: | 579 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1-773 |
| Cow position: | chr11:19101761-19100935 (view UCSC Genome Browser custom track) |
| Alignm length: | 829 |
| Alignm identity: | 585 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 759 |
| Conread position: | 1-773 |
| Cow position: | chr11:24394047-24394868 (view UCSC Genome Browser custom track) |
| Alignm length: | 827 |
| Alignm identity: | 574 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 319 |
| Conread position: | 1-773 |
| Cow position: | chr11:26070304-26069489 (view UCSC Genome Browser custom track) |
| Alignm length: | 826 |
| Alignm identity: | 568 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 74 |
| Conread position: | 1-773 |
| Cow position: | chr11:26124192-26123366 (view UCSC Genome Browser custom track) |
| Alignm length: | 835 |
| Alignm identity: | 584 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 13 |
| Conread position: | 1-773 |
| Cow position: | chr11:34454623-34455382 (view UCSC Genome Browser custom track) |
| Alignm length: | 793 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 175 |
| Conread position: | 1-773 |
| Cow position: | chr11:42311707-42310885 (view UCSC Genome Browser custom track) |
| Alignm length: | 835 |
| Alignm identity: | 560 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 129 |
| Conread position: | 1-773 |
| Cow position: | chr11:44582601-44581786 (view UCSC Genome Browser custom track) |
| Alignm length: | 824 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 156 |
| Conread position: | 1-773 |
| Cow position: | chr11:85393079-85392277 (view UCSC Genome Browser custom track) |
| Alignm length: | 822 |
| Alignm identity: | 559 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 13 |
| Conread position: | 1-774 |
| Cow position: | chr11:75554252-75553463 (view UCSC Genome Browser custom track) |
| Alignm length: | 816 |
| Alignm identity: | 579 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 60 |
| Conread position: | 3-618 |
| Cow position: | chr11:3855959-3856598 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 11 |
| Conread position: | 3-765 |
| Cow position: | chr11:18887594-18888364 (view UCSC Genome Browser custom track) |
| Alignm length: | 790 |
| Alignm identity: | 553 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 53 |
| Conread position: | 4-213 |
| Cow position: | chr11:31861638-31861849 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 161 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 4-225 |
| Cow position: | chr11:29232277-29232054 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 148, 72 |
| Conread position: | 4-366 |
| Cow position: | chr11:21616016-21616393 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 69, 92 |
| Conread position: | 5-730 |
| Cow position: | chr11:38834697-38833934 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 307 |
| Conread position: | 5-773 |
| Cow position: | chr11:23880768-23881579 (view UCSC Genome Browser custom track) |
| Alignm length: | 819 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 92 |
| Conread position: | 5-773 |
| Cow position: | chr11:29667868-29667038 (view UCSC Genome Browser custom track) |
| Alignm length: | 832 |
| Alignm identity: | 561 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 324 |
| Conread position: | 6-711 |
| Cow position: | chr11:8839681-8838966 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 452 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 80, 14 |
| Conread position: | 8-683 |
| Cow position: | chr11:4063127-4062446 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 40 |
| Conread position: | 8-771 |
| Cow position: | chr11:32452570-32453386 (view UCSC Genome Browser custom track) |
| Alignm length: | 820 |
| Alignm identity: | 561 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 17 |
| Conread position: | 8-771 |
| Cow position: | chr11:67845823-67845017 (view UCSC Genome Browser custom track) |
| Alignm length: | 813 |
| Alignm identity: | 545 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 17 |
| Conread position: | 17-468 |
| Cow position: | chr11:49558928-49558444 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 332 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 62, 133 |
| Conread position: | 17-773 |
| Cow position: | chr11:2727486-2728275 (view UCSC Genome Browser custom track) |
| Alignm length: | 807 |
| Alignm identity: | 535 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 306 |
| Conread position: | 18-771 |
| Cow position: | chr11:63654582-63653780 (view UCSC Genome Browser custom track) |
| Alignm length: | 806 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 46 |
| Conread position: | 59-535 |
| Cow position: | chr11:26074171-26073653 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 49 |
| Conread position: | 66-393 |
| Cow position: | chr11:33977659-33977296 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 8, 285 |
| Conread position: | 66-731 |
| Cow position: | chr11:28391768-28392481 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 71 |
| Conread position: | 67-465 |
| Cow position: | chr11:21899043-21898618 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 297 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 12, 43 |
| Conread position: | 126-773 |
| Cow position: | chr11:67154549-67155233 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 333 |
| Conread position: | 144-773 |
| Cow position: | chr11:26784138-26784806 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 192 |
| Conread position: | 155-773 |
| Cow position: | chr11:27657335-27657993 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 541 |
| Conread position: | 187-730 |
| Cow position: | chr11:64355765-64356309 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 74 |
| Conread position: | 193-773 |
| Cow position: | chr11:40775052-40774471 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 295 |
| Conread position: | 200-773 |
| Cow position: | chr11:2833287-2833850 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 47 |
| Conread position: | 223-486 |
| Cow position: | chr11:54484300-54484023 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 209 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 16, 259 |
| Conread position: | 223-773 |
| Cow position: | chr11:30253211-30253780 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 113 |
| Conread position: | 229-527 |
| Cow position: | chr11:25865850-25865542 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 85 |
| Conread position: | 307-731 |
| Cow position: | chr11:82147697-82147278 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 99 |
| Conread position: | 321-771 |
| Cow position: | chr11:47738461-47737993 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 213 |
| Conread position: | 355-773 |
| Cow position: | chr11:25393315-25393745 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 287 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 68, 106 |
| Conread position: | 355-773 |
| Cow position: | chr11:53430909-53430476 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
Show alignments to all cow chromosomes.