Cow genome map
| Conread name: | Thy1-THY010032D09 |
| Conread position: | 1-177 |
| Cow position: | chr15:5952637-5952473 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-205 |
| Cow position: | chr15:35752639-35752434 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-207 |
| Cow position: | chr15:6155264-6155058 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 79, 63 |
| Conread position: | 1-207 |
| Cow position: | chr15:13675180-13675382 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-213 |
| Cow position: | chr15:6623891-6624100 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 77, 23 |
| Conread position: | 1-213 |
| Cow position: | chr15:32515471-32515260 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 80, 114 |
| Conread position: | 1-503 |
| Cow position: | chr15:814895-814384 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 170 |
| Conread position: | 1-503 |
| Cow position: | chr15:6553141-6552597 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 114 |
| Conread position: | 1-535 |
| Cow position: | chr15:6485262-6485830 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 92 |
| Conread position: | 1-598 |
| Cow position: | chr15:6079431-6080057 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 101 |
| Conread position: | 1-644 |
| Cow position: | chr15:24718015-24718692 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 27 |
| Conread position: | 1-691 |
| Cow position: | chr15:4915871-4916588 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 126 |
| Conread position: | 1-730 |
| Cow position: | chr15:21450358-21451149 (view UCSC Genome Browser custom track) |
| Alignm length: | 799 |
| Alignm identity: | 542 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 114 |
| Conread position: | 1-769 |
| Cow position: | chr15:21665064-21664249 (view UCSC Genome Browser custom track) |
| Alignm length: | 819 |
| Alignm identity: | 561 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 339 |
| Conread position: | 1-770 |
| Cow position: | chr15:5981025-5981852 (view UCSC Genome Browser custom track) |
| Alignm length: | 832 |
| Alignm identity: | 566 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 512 |
| Conread position: | 1-771 |
| Cow position: | chr15:2077337-2078144 (view UCSC Genome Browser custom track) |
| Alignm length: | 817 |
| Alignm identity: | 566 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 125 |
| Conread position: | 1-771 |
| Cow position: | chr15:2646976-2646158 (view UCSC Genome Browser custom track) |
| Alignm length: | 825 |
| Alignm identity: | 564 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 63 |
| Conread position: | 1-772 |
| Cow position: | chr15:35736467-35737292 (view UCSC Genome Browser custom track) |
| Alignm length: | 826 |
| Alignm identity: | 560 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-773 |
| Cow position: | chr15:1851759-1850995 (view UCSC Genome Browser custom track) |
| Alignm length: | 788 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 133 |
| Conread position: | 1-773 |
| Cow position: | chr15:4386439-4387254 (view UCSC Genome Browser custom track) |
| Alignm length: | 823 |
| Alignm identity: | 578 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 83 |
| Conread position: | 1-773 |
| Cow position: | chr15:7837941-7838766 (view UCSC Genome Browser custom track) |
| Alignm length: | 828 |
| Alignm identity: | 573 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 62 |
| Conread position: | 1-773 |
| Cow position: | chr15:15346433-15345610 (view UCSC Genome Browser custom track) |
| Alignm length: | 825 |
| Alignm identity: | 566 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 114 |
| Conread position: | 1-773 |
| Cow position: | chr15:18332150-18331340 (view UCSC Genome Browser custom track) |
| Alignm length: | 815 |
| Alignm identity: | 561 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 771 |
| Conread position: | 1-773 |
| Cow position: | chr15:18577391-18578210 (view UCSC Genome Browser custom track) |
| Alignm length: | 822 |
| Alignm identity: | 571 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 748 |
| Conread position: | 2-176 |
| Cow position: | chr15:17684667-17684491 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 2-210 |
| Cow position: | chr15:16595510-16595720 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 160 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 2-773 |
| Cow position: | chr15:36668428-36669193 (view UCSC Genome Browser custom track) |
| Alignm length: | 788 |
| Alignm identity: | 535 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 128 |
| Conread position: | 4-206 |
| Cow position: | chr15:8811343-8811138 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 5-366 |
| Cow position: | chr15:46052367-46052751 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 249 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 72, 344 |
| Conread position: | 7-773 |
| Cow position: | chr15:32493192-32492385 (view UCSC Genome Browser custom track) |
| Alignm length: | 812 |
| Alignm identity: | 542 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 349 |
| Conread position: | 8-206 |
| Cow position: | chr15:524173-523984 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 8-618 |
| Cow position: | chr15:3009156-3008507 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 7 |
| Conread position: | 8-733 |
| Cow position: | chr15:1773186-1773950 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 17 |
| Conread position: | 8-771 |
| Cow position: | chr15:5010947-5010137 (view UCSC Genome Browser custom track) |
| Alignm length: | 814 |
| Alignm identity: | 559 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 7 |
| Conread position: | 8-771 |
| Cow position: | chr15:28489457-28488659 (view UCSC Genome Browser custom track) |
| Alignm length: | 803 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 7 |
| Conread position: | 8-771 |
| Cow position: | chr15:50123247-50122443 (view UCSC Genome Browser custom track) |
| Alignm length: | 812 |
| Alignm identity: | 551 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 7 |
| Conread position: | 8-773 |
| Cow position: | chr15:4652047-4652874 (view UCSC Genome Browser custom track) |
| Alignm length: | 833 |
| Alignm identity: | 565 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 90 |
| Conread position: | 8-773 |
| Cow position: | chr15:9430625-9431432 (view UCSC Genome Browser custom track) |
| Alignm length: | 818 |
| Alignm identity: | 543 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 119 |
| Conread position: | 8-773 |
| Cow position: | chr15:14581674-14580863 (view UCSC Genome Browser custom track) |
| Alignm length: | 819 |
| Alignm identity: | 552 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 67 |
| Conread position: | 10-746 |
| Cow position: | chr15:2925995-2926761 (view UCSC Genome Browser custom track) |
| Alignm length: | 785 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 330 |
| Conread position: | 10-773 |
| Cow position: | chr15:35646981-35646186 (view UCSC Genome Browser custom track) |
| Alignm length: | 808 |
| Alignm identity: | 560 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 52 |
| Conread position: | 15-590 |
| Cow position: | chr15:7261302-7261906 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 38 |
| Conread position: | 21-213 |
| Cow position: | chr15:8058657-8058849 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 58, 169 |
| Conread position: | 74-773 |
| Cow position: | chr15:24794576-24795314 (view UCSC Genome Browser custom track) |
| Alignm length: | 747 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 23 |
| Conread position: | 105-598 |
| Cow position: | chr15:42530696-42531229 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 87 |
| Conread position: | 124-766 |
| Cow position: | chr15:31846278-31846937 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 20 |
| Conread position: | 134-598 |
| Cow position: | chr15:7892517-7892033 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 325 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 64, 143 |
| Conread position: | 141-771 |
| Cow position: | chr15:41659009-41659663 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 11 |
| Conread position: | 217-569 |
| Cow position: | chr15:20361170-20360808 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 29 |
| Conread position: | 217-771 |
| Cow position: | chr15:7563913-7564493 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 22 |
| Conread position: | 225-773 |
| Cow position: | chr15:9003286-9002725 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 29 |
| Conread position: | 226-771 |
| Cow position: | chr15:18266850-18266270 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 13 |
| Conread position: | 229-700 |
| Cow position: | chr15:51218651-51219148 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 280 |
| Conread position: | 229-772 |
| Cow position: | chr15:4686662-4687226 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 37 |
| Conread position: | 237-488 |
| Cow position: | chr15:523885-523616 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 127, 36 |
| Conread position: | 265-765 |
| Cow position: | chr15:3889889-3890393 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 104 |
| Conread position: | 289-773 |
| Cow position: | chr15:6279470-6279963 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 238 |
| Conread position: | 290-771 |
| Cow position: | chr15:106989-107496 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 307-753 |
| Cow position: | chr15:1767852-1768304 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 241 |
| Conread position: | 316-509 |
| Cow position: | chr15:12419923-12419716 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 351-773 |
| Cow position: | chr15:7783374-7782938 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 61, 73 |
| Conread position: | 353-574 |
| Cow position: | chr15:6076599-6076831 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 59, 0 |
Show alignments to all cow chromosomes.