Cow genome map
| Conread name: | Thy1-THY010032D09 |
| Conread position: | 1-193 |
| Cow position: | chr16:7464163-7464358 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-207 |
| Cow position: | chr16:1860555-1860754 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 1-207 |
| Cow position: | chr16:15493839-15494047 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-207 |
| Cow position: | chr16:40295839-40295630 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-207 |
| Cow position: | chr16:43896939-43896731 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-213 |
| Cow position: | chr16:7676122-7675909 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 79, 114 |
| Conread position: | 1-213 |
| Cow position: | chr16:37480801-37480591 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-220 |
| Cow position: | chr16:23671033-23671253 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 77, 102 |
| Conread position: | 1-321 |
| Cow position: | chr16:25739005-25739315 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 101, 21 |
| Conread position: | 1-449 |
| Cow position: | chr16:15477177-15477661 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-496 |
| Cow position: | chr16:4478635-4478097 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 322 |
| Conread position: | 1-527 |
| Cow position: | chr16:406703-406136 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 125 |
| Conread position: | 1-535 |
| Cow position: | chr16:41166310-41165763 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 316 |
| Conread position: | 1-632 |
| Cow position: | chr16:56120008-56120654 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 26 |
| Conread position: | 1-699 |
| Cow position: | chr16:5485066-5485804 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 323 |
| Conread position: | 1-764 |
| Cow position: | chr16:16897793-16898611 (view UCSC Genome Browser custom track) |
| Alignm length: | 829 |
| Alignm identity: | 594 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 13 |
| Conread position: | 1-765 |
| Cow position: | chr16:10375264-10374456 (view UCSC Genome Browser custom track) |
| Alignm length: | 815 |
| Alignm identity: | 553 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 63 |
| Conread position: | 1-768 |
| Cow position: | chr16:25441966-25442779 (view UCSC Genome Browser custom track) |
| Alignm length: | 819 |
| Alignm identity: | 574 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 125 |
| Conread position: | 1-771 |
| Cow position: | chr16:23983633-23984455 (view UCSC Genome Browser custom track) |
| Alignm length: | 826 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 24 |
| Conread position: | 1-772 |
| Cow position: | chr16:20202335-20203129 (view UCSC Genome Browser custom track) |
| Alignm length: | 807 |
| Alignm identity: | 546 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 93 |
| Conread position: | 1-773 |
| Cow position: | chr16:1432526-1433339 (view UCSC Genome Browser custom track) |
| Alignm length: | 819 |
| Alignm identity: | 557 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 114 |
| Conread position: | 1-773 |
| Cow position: | chr16:1567117-1566309 (view UCSC Genome Browser custom track) |
| Alignm length: | 826 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 128 |
| Conread position: | 1-773 |
| Cow position: | chr16:2482801-2481996 (view UCSC Genome Browser custom track) |
| Alignm length: | 820 |
| Alignm identity: | 565 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 125 |
| Conread position: | 1-773 |
| Cow position: | chr16:3330273-3331084 (view UCSC Genome Browser custom track) |
| Alignm length: | 815 |
| Alignm identity: | 556 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 516 |
| Conread position: | 1-773 |
| Cow position: | chr16:12537591-12536798 (view UCSC Genome Browser custom track) |
| Alignm length: | 806 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 100 |
| Conread position: | 1-773 |
| Cow position: | chr16:14665471-14664661 (view UCSC Genome Browser custom track) |
| Alignm length: | 815 |
| Alignm identity: | 564 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 20 |
| Conread position: | 1-773 |
| Cow position: | chr16:15567591-15568411 (view UCSC Genome Browser custom track) |
| Alignm length: | 822 |
| Alignm identity: | 570 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 783 |
| Conread position: | 1-773 |
| Cow position: | chr16:48680370-48679594 (view UCSC Genome Browser custom track) |
| Alignm length: | 791 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 165 |
| Conread position: | 1-773 |
| Cow position: | chr16:49221542-49220764 (view UCSC Genome Browser custom track) |
| Alignm length: | 797 |
| Alignm identity: | 554 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 112 |
| Conread position: | 2-764 |
| Cow position: | chr16:8815768-8814962 (view UCSC Genome Browser custom track) |
| Alignm length: | 812 |
| Alignm identity: | 572 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 327 |
| Conread position: | 2-773 |
| Cow position: | chr16:837656-838467 (view UCSC Genome Browser custom track) |
| Alignm length: | 818 |
| Alignm identity: | 568 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 122 |
| Conread position: | 3-424 |
| Cow position: | chr16:27714463-27714033 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 303 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 196, 60 |
| Conread position: | 3-773 |
| Cow position: | chr16:23535553-23534744 (view UCSC Genome Browser custom track) |
| Alignm length: | 814 |
| Alignm identity: | 580 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 322 |
| Conread position: | 3-773 |
| Cow position: | chr16:26664090-26664881 (view UCSC Genome Browser custom track) |
| Alignm length: | 811 |
| Alignm identity: | 539 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 147 |
| Conread position: | 4-771 |
| Cow position: | chr16:48912026-48911302 (view UCSC Genome Browser custom track) |
| Alignm length: | 772 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 118 |
| Conread position: | 5-209 |
| Cow position: | chr16:38540605-38540397 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 5-771 |
| Cow position: | chr16:6716249-6715465 (view UCSC Genome Browser custom track) |
| Alignm length: | 804 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 57 |
| Conread position: | 5-771 |
| Cow position: | chr16:49279776-49280581 (view UCSC Genome Browser custom track) |
| Alignm length: | 826 |
| Alignm identity: | 518 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 60, 49 |
| Conread position: | 8-207 |
| Cow position: | chr16:25342312-25342501 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 8-213 |
| Cow position: | chr16:41755116-41754910 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 71, 11 |
| Conread position: | 9-397 |
| Cow position: | chr16:3828926-3828525 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 70 |
| Conread position: | 9-714 |
| Cow position: | chr16:41762184-41762912 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 53 |
| Conread position: | 14-770 |
| Cow position: | chr16:23801771-23800988 (view UCSC Genome Browser custom track) |
| Alignm length: | 798 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 99 |
| Conread position: | 15-397 |
| Cow position: | chr16:23808684-23809080 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 98 |
| Conread position: | 15-771 |
| Cow position: | chr16:5662177-5662992 (view UCSC Genome Browser custom track) |
| Alignm length: | 821 |
| Alignm identity: | 553 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 87 |
| Conread position: | 24-773 |
| Cow position: | chr16:47474608-47475396 (view UCSC Genome Browser custom track) |
| Alignm length: | 800 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 322 |
| Conread position: | 206-592 |
| Cow position: | chr16:16520202-16519805 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 58 |
| Conread position: | 217-469 |
| Cow position: | chr16:7464892-7465160 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 150, 179 |
| Conread position: | 223-614 |
| Cow position: | chr16:19150008-19149611 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 258 |
| Conread position: | 223-774 |
| Cow position: | chr16:33107-33687 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 87 |
| Conread position: | 228-741 |
| Cow position: | chr16:51403301-51402753 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 363 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 47, 9 |
| Conread position: | 228-773 |
| Cow position: | chr16:41685660-41685113 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 229-774 |
| Cow position: | chr16:1860818-1861396 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 540 |
| Conread position: | 230-773 |
| Cow position: | chr16:40295573-40295012 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 9 |
| Conread position: | 234-770 |
| Cow position: | chr16:23671296-23671848 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 12 |
| Conread position: | 240-771 |
| Cow position: | chr16:5527789-5527234 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 66 |
Show alignments to all cow chromosomes.