Cow genome map

Conread name: Thy1-THY010032D09

Conread position: 1-172
Cow position: chr2:10268098-10267930 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 79, 125

Conread position: 1-201
Cow position: chr2:2451754-2451951 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 147
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 75, 98

Conread position: 1-206
Cow position: chr2:282127-281922 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 143
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 1-213
Cow position: chr2:36980942-36981155 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 159
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 46, 136

Conread position: 1-325
Cow position: chr2:24147425-24147768 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 245
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 79, 165

Conread position: 1-334
Cow position: chr2:54840494-54840847 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 239
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 81, 112

Conread position: 1-366
Cow position: chr2:53330324-53330717 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 331

Conread position: 1-466
Cow position: chr2:40453474-40453960 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 108

Conread position: 1-519
Cow position: chr2:74857783-74858287 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 347
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 78, 13

Conread position: 1-589
Cow position: chr2:289218-288594 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 348

Conread position: 1-614
Cow position: chr2:44649843-44650468 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 34

Conread position: 1-665
Cow position: chr2:36277829-36277147 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 118

Conread position: 1-693
Cow position: chr2:33088681-33089363 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 106

Conread position: 1-694
Cow position: chr2:11693049-11693775 (view UCSC Genome Browser custom track)
Alignm length: 735
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 50

Conread position: 1-727
Cow position: chr2:43961257-43962009 (view UCSC Genome Browser custom track)
Alignm length: 770
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 13

Conread position: 1-729
Cow position: chr2:72187910-72187156 (view UCSC Genome Browser custom track)
Alignm length: 779
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 75

Conread position: 1-730
Cow position: chr2:57336107-57336889 (view UCSC Genome Browser custom track)
Alignm length: 784
Alignm identity: 542
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 63

Conread position: 1-733
Cow position: chr2:50323704-50324423 (view UCSC Genome Browser custom track)
Alignm length: 766
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 168

Conread position: 1-736
Cow position: chr2:47622061-47621295 (view UCSC Genome Browser custom track)
Alignm length: 788
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 14

Conread position: 1-771
Cow position: chr2:9908476-9909306 (view UCSC Genome Browser custom track)
Alignm length: 832
Alignm identity: 563
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 63

Conread position: 1-771
Cow position: chr2:9958505-9957690 (view UCSC Genome Browser custom track)
Alignm length: 824
Alignm identity: 565
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 58

Conread position: 1-771
Cow position: chr2:54738053-54738869 (view UCSC Genome Browser custom track)
Alignm length: 820
Alignm identity: 559
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 154

Conread position: 1-771
Cow position: chr2:65937676-65936845 (view UCSC Genome Browser custom track)
Alignm length: 834
Alignm identity: 572
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 517

Conread position: 1-773
Cow position: chr2:3789281-3788507 (view UCSC Genome Browser custom track)
Alignm length: 818
Alignm identity: 566
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 55

Conread position: 1-773
Cow position: chr2:6962081-6962896 (view UCSC Genome Browser custom track)
Alignm length: 824
Alignm identity: 559
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 47

Conread position: 1-773
Cow position: chr2:13045151-13044323 (view UCSC Genome Browser custom track)
Alignm length: 829
Alignm identity: 574
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 0

Conread position: 1-773
Cow position: chr2:16900821-16901637 (view UCSC Genome Browser custom track)
Alignm length: 820
Alignm identity: 583
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 750

Conread position: 1-773
Cow position: chr2:24925127-24925950 (view UCSC Genome Browser custom track)
Alignm length: 827
Alignm identity: 567
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 508

Conread position: 1-773
Cow position: chr2:25887980-25887165 (view UCSC Genome Browser custom track)
Alignm length: 820
Alignm identity: 551
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 26

Conread position: 1-773
Cow position: chr2:28649036-28648224 (view UCSC Genome Browser custom track)
Alignm length: 818
Alignm identity: 560
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 112

Conread position: 1-773
Cow position: chr2:47811410-47812234 (view UCSC Genome Browser custom track)
Alignm length: 828
Alignm identity: 571
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 524

Conread position: 1-773
Cow position: chr2:74494267-74493469 (view UCSC Genome Browser custom track)
Alignm length: 816
Alignm identity: 499
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 168, 80

Conread position: 2-469
Cow position: chr2:211696-211218 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 239

Conread position: 3-207
Cow position: chr2:19011917-19012124 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 153
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 77, 0

Conread position: 3-719
Cow position: chr2:35356582-35357315 (view UCSC Genome Browser custom track)
Alignm length: 765
Alignm identity: 543
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 95

Conread position: 4-366
Cow position: chr2:12516620-12516254 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 258
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 76, 44

Conread position: 5-225
Cow position: chr2:6751137-6750917 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 167
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 74, 196

Conread position: 5-327
Cow position: chr2:5889078-5888741 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 225
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 83, 58

Conread position: 5-530
Cow position: chr2:31662645-31663193 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 356
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 72, 39

Conread position: 6-340
Cow position: chr2:32372820-32372469 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 250
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 74, 50

Conread position: 6-612
Cow position: chr2:42332319-42331668 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 8

Conread position: 8-321
Cow position: chr2:22078358-22078689 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 241
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 72, 102

Conread position: 8-676
Cow position: chr2:55483578-55482873 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 110

Conread position: 8-697
Cow position: chr2:904880-905571 (view UCSC Genome Browser custom track)
Alignm length: 720
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 50

Conread position: 8-770
Cow position: chr2:16282917-16283673 (view UCSC Genome Browser custom track)
Alignm length: 797
Alignm identity: 544
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 44

Conread position: 8-771
Cow position: chr2:26905183-26904393 (view UCSC Genome Browser custom track)
Alignm length: 808
Alignm identity: 540
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 17

Conread position: 8-771
Cow position: chr2:39422193-39423006 (view UCSC Genome Browser custom track)
Alignm length: 817
Alignm identity: 562
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 17

Conread position: 8-773
Cow position: chr2:44934404-44933622 (view UCSC Genome Browser custom track)
Alignm length: 803
Alignm identity: 542
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 16

Conread position: 8-774
Cow position: chr2:25028722-25027920 (view UCSC Genome Browser custom track)
Alignm length: 807
Alignm identity: 570
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 7

Conread position: 9-769
Cow position: chr2:26921996-26922808 (view UCSC Genome Browser custom track)
Alignm length: 814
Alignm identity: 550
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 55

Conread position: 10-213
Cow position: chr2:51998348-51998148 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 150
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 70, 94

Conread position: 26-302
Cow position: chr2:37789319-37789031 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 210
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 42, 38

Conread position: 45-730
Cow position: chr2:41687376-41688109 (view UCSC Genome Browser custom track)
Alignm length: 735
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 566

Conread position: 48-524
Cow position: chr2:49628387-49628905 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 33

Conread position: 48-773
Cow position: chr2:12223665-12222893 (view UCSC Genome Browser custom track)
Alignm length: 774
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 220

Conread position: 104-773
Cow position: chr2:32458373-32457675 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 8

Conread position: 150-424
Cow position: chr2:36076515-36076233 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 202
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 47, 70

Conread position: 150-771
Cow position: chr2:14210085-14209440 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 66

Conread position: 196-469
Cow position: chr2:5869569-5869288 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 198
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 43, 120

Conread position: 204-771
Cow position: chr2:6006052-6005466 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 39

Conread position: 209-590
Cow position: chr2:16291484-16291880 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 41

Conread position: 209-773
Cow position: chr2:45938884-45938318 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 8

Conread position: 223-773
Cow position: chr2:47526555-47525984 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 105

Conread position: 229-528
Cow position: chr2:72548072-72547772 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 212
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 13, 96

Conread position: 230-489
Cow position: chr2:41154629-41154910 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 197
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 7, 116

Conread position: 231-773
Cow position: chr2:32065221-32064661 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 496

Conread position: 234-771
Cow position: chr2:51618078-51618620 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 13

Conread position: 241-773
Cow position: chr2:7326525-7327077 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 344
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 40, 31

Conread position: 247-773
Cow position: chr2:24926252-24926799 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 21

Conread position: 255-507
Cow position: chr2:17424700-17424970 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 195
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 109, 0

Conread position: 307-503
Cow position: chr2:31706578-31706375 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 148
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 57, 0

Conread position: 315-618
Cow position: chr2:2206910-2206597 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 207
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 27, 13

Conread position: 320-773
Cow position: chr2:14823955-14824412 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 213

Conread position: 382-773
Cow position: chr2:37789031-37788639 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 302

Conread position: 422-770
Cow position: chr2:48815306-48815649 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 89

Show alignments to all cow chromosomes.