Cow genome map
| Conread name: | Thy1-THY010032D09 |
| Conread position: | 1-153 |
| Cow position: | chr21:25782831-25782985 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 1-175 |
| Cow position: | chr21:30562678-30562847 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 79, 112 |
| Conread position: | 1-209 |
| Cow position: | chr21:1688961-1688750 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 1-224 |
| Cow position: | chr21:2882542-2882319 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 79, 114 |
| Conread position: | 1-300 |
| Cow position: | chr21:21915880-21916207 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 77, 60 |
| Conread position: | 1-352 |
| Cow position: | chr21:18817355-18816993 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 25, 163 |
| Conread position: | 1-369 |
| Cow position: | chr21:39088195-39088565 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 263 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 142, 12 |
| Conread position: | 1-377 |
| Cow position: | chr21:5840070-5839665 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-429 |
| Cow position: | chr21:4716211-4716668 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 315 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 101, 74 |
| Conread position: | 1-468 |
| Cow position: | chr21:3169591-3170075 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 40 |
| Conread position: | 1-469 |
| Cow position: | chr21:45786236-45785751 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 55 |
| Conread position: | 1-514 |
| Cow position: | chr21:35144952-35145492 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 336 |
| Conread position: | 1-654 |
| Cow position: | chr21:218223-218903 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 37 |
| Conread position: | 1-682 |
| Cow position: | chr21:33253375-33254105 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 284 |
| Conread position: | 1-771 |
| Cow position: | chr21:26635948-26635144 (view UCSC Genome Browser custom track) |
| Alignm length: | 822 |
| Alignm identity: | 555 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 23 |
| Conread position: | 1-771 |
| Cow position: | chr21:30598285-30597457 (view UCSC Genome Browser custom track) |
| Alignm length: | 832 |
| Alignm identity: | 578 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 57 |
| Conread position: | 1-772 |
| Cow position: | chr21:2417410-2418217 (view UCSC Genome Browser custom track) |
| Alignm length: | 820 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 13 |
| Conread position: | 1-773 |
| Cow position: | chr21:147125-147935 (view UCSC Genome Browser custom track) |
| Alignm length: | 820 |
| Alignm identity: | 577 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 83 |
| Conread position: | 1-773 |
| Cow position: | chr21:2512041-2512864 (view UCSC Genome Browser custom track) |
| Alignm length: | 826 |
| Alignm identity: | 566 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 45 |
| Conread position: | 1-773 |
| Cow position: | chr21:3779963-3780790 (view UCSC Genome Browser custom track) |
| Alignm length: | 830 |
| Alignm identity: | 574 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 14 |
| Conread position: | 1-773 |
| Cow position: | chr21:27069768-27068949 (view UCSC Genome Browser custom track) |
| Alignm length: | 823 |
| Alignm identity: | 561 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 123 |
| Conread position: | 1-773 |
| Cow position: | chr21:27284661-27285462 (view UCSC Genome Browser custom track) |
| Alignm length: | 816 |
| Alignm identity: | 556 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 420 |
| Conread position: | 1-773 |
| Cow position: | chr21:31515123-31514302 (view UCSC Genome Browser custom track) |
| Alignm length: | 822 |
| Alignm identity: | 584 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-773 |
| Cow position: | chr21:35774138-35774929 (view UCSC Genome Browser custom track) |
| Alignm length: | 805 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 161 |
| Conread position: | 1-773 |
| Cow position: | chr21:40270479-40269656 (view UCSC Genome Browser custom track) |
| Alignm length: | 826 |
| Alignm identity: | 582 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 165 |
| Conread position: | 1-773 |
| Cow position: | chr21:47646525-47647347 (view UCSC Genome Browser custom track) |
| Alignm length: | 826 |
| Alignm identity: | 569 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 125 |
| Conread position: | 6-213 |
| Cow position: | chr21:468054-468263 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 160 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 7-543 |
| Cow position: | chr21:34823011-34822433 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 18 |
| Conread position: | 8-213 |
| Cow position: | chr21:4077985-4078183 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 8-277 |
| Cow position: | chr21:23297624-23297357 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 31, 39 |
| Conread position: | 8-629 |
| Cow position: | chr21:27566945-27567610 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 323 |
| Conread position: | 8-676 |
| Cow position: | chr21:10851286-10851995 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 9-733 |
| Cow position: | chr21:26849817-26849058 (view UCSC Genome Browser custom track) |
| Alignm length: | 766 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 328 |
| Conread position: | 15-545 |
| Cow position: | chr21:21519803-21520382 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 386 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 40, 517 |
| Conread position: | 17-726 |
| Cow position: | chr21:23708464-23709187 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 463 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 67, 58 |
| Conread position: | 26-773 |
| Cow position: | chr21:28613567-28614327 (view UCSC Genome Browser custom track) |
| Alignm length: | 774 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 103 |
| Conread position: | 42-469 |
| Cow position: | chr21:4185161-4185613 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 316 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 36, 18 |
| Conread position: | 59-519 |
| Cow position: | chr21:12054767-12054264 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 107 |
| Conread position: | 217-676 |
| Cow position: | chr21:38801870-38802355 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 22 |
| Conread position: | 226-773 |
| Cow position: | chr21:21024910-21025475 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 36 |
| Conread position: | 232-773 |
| Cow position: | chr21:34655287-34655844 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 64 |
| Conread position: | 237-773 |
| Cow position: | chr21:31250468-31251008 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 9 |
| Conread position: | 285-762 |
| Cow position: | chr21:25125112-25125605 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 11 |
| Conread position: | 286-771 |
| Cow position: | chr21:6414522-6414011 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 291-756 |
| Cow position: | chr21:997327-996840 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 22 |
| Conread position: | 403-773 |
| Cow position: | chr21:44764315-44763939 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 68 |
Show alignments to all cow chromosomes.