Cow genome map
| Conread name: | Thy1-THY010032D09 |
| Conread position: | 1-170 |
| Cow position: | chr28:10581021-10580848 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-192 |
| Cow position: | chr28:1813793-1813603 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 79, 125 |
| Conread position: | 1-197 |
| Cow position: | chr28:7028708-7028521 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 148, 53 |
| Conread position: | 1-206 |
| Cow position: | chr28:12151376-12151583 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 67, 55 |
| Conread position: | 1-207 |
| Cow position: | chr28:10470578-10470782 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 1-207 |
| Cow position: | chr28:12409165-12408960 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 67, 63 |
| Conread position: | 1-366 |
| Cow position: | chr28:14232862-14232464 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 200 |
| Conread position: | 1-485 |
| Cow position: | chr28:10460537-10460023 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 334 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 196, 99 |
| Conread position: | 1-534 |
| Cow position: | chr28:9179694-9180252 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 57 |
| Conread position: | 1-569 |
| Cow position: | chr28:9268924-9269484 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 382 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 74, 44 |
| Conread position: | 1-720 |
| Cow position: | chr28:29821065-29821824 (view UCSC Genome Browser custom track) |
| Alignm length: | 765 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 497 |
| Conread position: | 1-753 |
| Cow position: | chr28:5938554-5939356 (view UCSC Genome Browser custom track) |
| Alignm length: | 807 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 127 |
| Conread position: | 1-753 |
| Cow position: | chr28:7827056-7827847 (view UCSC Genome Browser custom track) |
| Alignm length: | 801 |
| Alignm identity: | 546 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 15 |
| Conread position: | 1-764 |
| Cow position: | chr28:1505936-1506746 (view UCSC Genome Browser custom track) |
| Alignm length: | 814 |
| Alignm identity: | 566 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 322 |
| Conread position: | 1-771 |
| Cow position: | chr28:18519379-18518560 (view UCSC Genome Browser custom track) |
| Alignm length: | 823 |
| Alignm identity: | 567 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 125 |
| Conread position: | 1-773 |
| Cow position: | chr28:783728-784546 (view UCSC Genome Browser custom track) |
| Alignm length: | 821 |
| Alignm identity: | 568 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 25 |
| Conread position: | 1-773 |
| Cow position: | chr28:1166809-1166005 (view UCSC Genome Browser custom track) |
| Alignm length: | 807 |
| Alignm identity: | 551 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 40 |
| Conread position: | 1-773 |
| Cow position: | chr28:2085528-2086354 (view UCSC Genome Browser custom track) |
| Alignm length: | 827 |
| Alignm identity: | 572 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-773 |
| Cow position: | chr28:3191186-3190363 (view UCSC Genome Browser custom track) |
| Alignm length: | 824 |
| Alignm identity: | 579 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 1-773 |
| Cow position: | chr28:7003065-7003889 (view UCSC Genome Browser custom track) |
| Alignm length: | 827 |
| Alignm identity: | 571 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 148 |
| Conread position: | 1-773 |
| Cow position: | chr28:7741516-7742316 (view UCSC Genome Browser custom track) |
| Alignm length: | 823 |
| Alignm identity: | 567 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 47 |
| Conread position: | 1-773 |
| Cow position: | chr28:8380133-8380925 (view UCSC Genome Browser custom track) |
| Alignm length: | 802 |
| Alignm identity: | 566 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 241 |
| Conread position: | 1-773 |
| Cow position: | chr28:13461050-13461849 (view UCSC Genome Browser custom track) |
| Alignm length: | 815 |
| Alignm identity: | 575 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 83 |
| Conread position: | 1-773 |
| Cow position: | chr28:17666237-17665438 (view UCSC Genome Browser custom track) |
| Alignm length: | 812 |
| Alignm identity: | 565 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 572 |
| Conread position: | 1-773 |
| Cow position: | chr28:22260082-22259268 (view UCSC Genome Browser custom track) |
| Alignm length: | 817 |
| Alignm identity: | 573 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 747 |
| Conread position: | 1-773 |
| Cow position: | chr28:26425186-26424372 (view UCSC Genome Browser custom track) |
| Alignm length: | 823 |
| Alignm identity: | 570 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 320 |
| Conread position: | 1-773 |
| Cow position: | chr28:28439881-28440624 (view UCSC Genome Browser custom track) |
| Alignm length: | 789 |
| Alignm identity: | 494 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 79, 257 |
| Conread position: | 1-773 |
| Cow position: | chr28:32791308-32790510 (view UCSC Genome Browser custom track) |
| Alignm length: | 821 |
| Alignm identity: | 569 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 44 |
| Conread position: | 1-773 |
| Cow position: | chr28:33253393-33254192 (view UCSC Genome Browser custom track) |
| Alignm length: | 823 |
| Alignm identity: | 569 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 63 |
| Conread position: | 1-774 |
| Cow position: | chr28:22232209-22231402 (view UCSC Genome Browser custom track) |
| Alignm length: | 814 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 252 |
| Conread position: | 4-773 |
| Cow position: | chr28:21360569-21361381 (view UCSC Genome Browser custom track) |
| Alignm length: | 824 |
| Alignm identity: | 569 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 10 |
| Conread position: | 8-207 |
| Cow position: | chr28:15035035-15034846 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 8-596 |
| Cow position: | chr28:21566530-21567144 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 334 |
| Conread position: | 8-771 |
| Cow position: | chr28:1954432-1955242 (view UCSC Genome Browser custom track) |
| Alignm length: | 814 |
| Alignm identity: | 560 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 17 |
| Conread position: | 10-182 |
| Cow position: | chr28:29760851-29760677 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 58, 51 |
| Conread position: | 15-771 |
| Cow position: | chr28:6778859-6778054 (view UCSC Genome Browser custom track) |
| Alignm length: | 808 |
| Alignm identity: | 545 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 340 |
| Conread position: | 21-769 |
| Cow position: | chr28:484507-483709 (view UCSC Genome Browser custom track) |
| Alignm length: | 801 |
| Alignm identity: | 546 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 283 |
| Conread position: | 51-773 |
| Cow position: | chr28:17389520-17390292 (view UCSC Genome Browser custom track) |
| Alignm length: | 773 |
| Alignm identity: | 551 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 103-770 |
| Cow position: | chr28:22456992-22457652 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 15 |
| Conread position: | 155-424 |
| Cow position: | chr28:15684683-15684973 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 60, 282 |
| Conread position: | 197-773 |
| Cow position: | chr28:10470956-10471541 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 40 |
| Conread position: | 205-771 |
| Cow position: | chr28:6537519-6536916 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 213-630 |
| Cow position: | chr28:2117282-2117736 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 312 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 26, 35 |
| Conread position: | 217-771 |
| Cow position: | chr28:1459403-1459982 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 22 |
| Conread position: | 228-596 |
| Cow position: | chr28:13604079-13604460 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 80, 19 |
| Conread position: | 230-773 |
| Cow position: | chr28:5750380-5749815 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 497 |
| Conread position: | 239-773 |
| Cow position: | chr28:10580539-10579986 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 68 |
| Conread position: | 248-773 |
| Cow position: | chr28:1216492-1215950 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 58 |
| Conread position: | 268-483 |
| Cow position: | chr28:10067972-10067747 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 88, 146 |
| Conread position: | 353-617 |
| Cow position: | chr28:11489423-11489153 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 71, 34 |
| Conread position: | 362-765 |
| Cow position: | chr28:5814694-5815086 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 64 |
| Conread position: | 364-771 |
| Cow position: | chr28:9288413-9288834 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
Show alignments to all cow chromosomes.