Cow genome map
| Conread name: | Thy1-THY010032D09 |
| Conread position: | 1-197 |
| Cow position: | chr3:54771812-54771998 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1-211 |
| Cow position: | chr3:11198600-11198391 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 78, 45 |
| Conread position: | 1-213 |
| Cow position: | chr3:42448056-42448270 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-213 |
| Cow position: | chr3:75040212-75039998 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-213 |
| Cow position: | chr3:83232185-83231976 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 78, 105 |
| Conread position: | 1-219 |
| Cow position: | chr3:19939838-19940057 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 79, 168 |
| Conread position: | 1-295 |
| Cow position: | chr3:45865151-45864855 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 80, 149 |
| Conread position: | 1-301 |
| Cow position: | chr3:49271164-49270879 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 65, 175 |
| Conread position: | 1-333 |
| Cow position: | chr3:42994719-42994372 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 56, 81 |
| Conread position: | 1-366 |
| Cow position: | chr3:36118853-36119216 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 260 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 201, 14 |
| Conread position: | 1-366 |
| Cow position: | chr3:56339467-56339086 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 265 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 79, 114 |
| Conread position: | 1-369 |
| Cow position: | chr3:57979655-57979297 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 251 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 62, 156 |
| Conread position: | 1-399 |
| Cow position: | chr3:78909217-78908792 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 289 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 80, 153 |
| Conread position: | 1-413 |
| Cow position: | chr3:33845731-33845297 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 310 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 62, 36 |
| Conread position: | 1-427 |
| Cow position: | chr3:56398135-56398590 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 319 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 78, 39 |
| Conread position: | 1-450 |
| Cow position: | chr3:59862325-59862810 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 334 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 24, 350 |
| Conread position: | 1-485 |
| Cow position: | chr3:10240608-10241126 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 321 |
| Conread position: | 1-653 |
| Cow position: | chr3:41039444-41040112 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 405 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 73, 95 |
| Conread position: | 1-653 |
| Cow position: | chr3:48229526-48228867 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 390 |
| Conread position: | 1-669 |
| Cow position: | chr3:47080465-47079748 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 15 |
| Conread position: | 1-728 |
| Cow position: | chr3:50916284-50917060 (view UCSC Genome Browser custom track) |
| Alignm length: | 788 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 330 |
| Conread position: | 1-751 |
| Cow position: | chr3:4736922-4736185 (view UCSC Genome Browser custom track) |
| Alignm length: | 780 |
| Alignm identity: | 542 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 47 |
| Conread position: | 1-753 |
| Cow position: | chr3:79431757-79431024 (view UCSC Genome Browser custom track) |
| Alignm length: | 773 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 130 |
| Conread position: | 1-771 |
| Cow position: | chr3:2918412-2919231 (view UCSC Genome Browser custom track) |
| Alignm length: | 827 |
| Alignm identity: | 558 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 63 |
| Conread position: | 1-771 |
| Cow position: | chr3:30617975-30617158 (view UCSC Genome Browser custom track) |
| Alignm length: | 823 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 554 |
| Conread position: | 1-771 |
| Cow position: | chr3:68699021-68698208 (view UCSC Genome Browser custom track) |
| Alignm length: | 815 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 63 |
| Conread position: | 1-772 |
| Cow position: | chr3:78026471-78025655 (view UCSC Genome Browser custom track) |
| Alignm length: | 820 |
| Alignm identity: | 565 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 332 |
| Conread position: | 1-773 |
| Cow position: | chr3:7478974-7478158 (view UCSC Genome Browser custom track) |
| Alignm length: | 829 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 725 |
| Conread position: | 1-773 |
| Cow position: | chr3:15054721-15053942 (view UCSC Genome Browser custom track) |
| Alignm length: | 814 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 20 |
| Conread position: | 1-773 |
| Cow position: | chr3:18812449-18813268 (view UCSC Genome Browser custom track) |
| Alignm length: | 824 |
| Alignm identity: | 582 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 125 |
| Conread position: | 1-773 |
| Cow position: | chr3:19755987-19755195 (view UCSC Genome Browser custom track) |
| Alignm length: | 806 |
| Alignm identity: | 558 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 325 |
| Conread position: | 1-773 |
| Cow position: | chr3:21181751-21180929 (view UCSC Genome Browser custom track) |
| Alignm length: | 823 |
| Alignm identity: | 575 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-773 |
| Cow position: | chr3:24445128-24444333 (view UCSC Genome Browser custom track) |
| Alignm length: | 811 |
| Alignm identity: | 554 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 287 |
| Conread position: | 1-773 |
| Cow position: | chr3:24644181-24644981 (view UCSC Genome Browser custom track) |
| Alignm length: | 808 |
| Alignm identity: | 598 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 20 |
| Conread position: | 1-773 |
| Cow position: | chr3:40824338-40825162 (view UCSC Genome Browser custom track) |
| Alignm length: | 827 |
| Alignm identity: | 584 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 282 |
| Conread position: | 1-773 |
| Cow position: | chr3:46016992-46017810 (view UCSC Genome Browser custom track) |
| Alignm length: | 836 |
| Alignm identity: | 560 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 102 |
| Conread position: | 1-773 |
| Cow position: | chr3:48058408-48057594 (view UCSC Genome Browser custom track) |
| Alignm length: | 826 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 114 |
| Conread position: | 1-773 |
| Cow position: | chr3:49136610-49135796 (view UCSC Genome Browser custom track) |
| Alignm length: | 827 |
| Alignm identity: | 573 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 24 |
| Conread position: | 1-773 |
| Cow position: | chr3:55892361-55893143 (view UCSC Genome Browser custom track) |
| Alignm length: | 802 |
| Alignm identity: | 567 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 183 |
| Conread position: | 1-773 |
| Cow position: | chr3:57483783-57482957 (view UCSC Genome Browser custom track) |
| Alignm length: | 828 |
| Alignm identity: | 571 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 61 |
| Conread position: | 1-773 |
| Cow position: | chr3:72631023-72631826 (view UCSC Genome Browser custom track) |
| Alignm length: | 821 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 63 |
| Conread position: | 2-351 |
| Cow position: | chr3:42052209-42051847 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 267 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 76, 59 |
| Conread position: | 2-773 |
| Cow position: | chr3:2709919-2709101 (view UCSC Genome Browser custom track) |
| Alignm length: | 825 |
| Alignm identity: | 582 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 23 |
| Conread position: | 2-773 |
| Cow position: | chr3:29579578-29580389 (view UCSC Genome Browser custom track) |
| Alignm length: | 832 |
| Alignm identity: | 557 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 22 |
| Conread position: | 5-773 |
| Cow position: | chr3:23289381-23288565 (view UCSC Genome Browser custom track) |
| Alignm length: | 822 |
| Alignm identity: | 566 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 124 |
| Conread position: | 8-771 |
| Cow position: | chr3:2869747-2870555 (view UCSC Genome Browser custom track) |
| Alignm length: | 816 |
| Alignm identity: | 556 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 17 |
| Conread position: | 8-771 |
| Cow position: | chr3:3523973-3524778 (view UCSC Genome Browser custom track) |
| Alignm length: | 817 |
| Alignm identity: | 556 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 16 |
| Conread position: | 8-771 |
| Cow position: | chr3:4287043-4287851 (view UCSC Genome Browser custom track) |
| Alignm length: | 817 |
| Alignm identity: | 568 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 17 |
| Conread position: | 8-771 |
| Cow position: | chr3:19800219-19799412 (view UCSC Genome Browser custom track) |
| Alignm length: | 810 |
| Alignm identity: | 552 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 7 |
| Conread position: | 8-771 |
| Cow position: | chr3:46860333-46859527 (view UCSC Genome Browser custom track) |
| Alignm length: | 813 |
| Alignm identity: | 554 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 7 |
| Conread position: | 8-773 |
| Cow position: | chr3:49544253-49543443 (view UCSC Genome Browser custom track) |
| Alignm length: | 815 |
| Alignm identity: | 567 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 107 |
| Conread position: | 8-773 |
| Cow position: | chr3:53516560-53517378 (view UCSC Genome Browser custom track) |
| Alignm length: | 821 |
| Alignm identity: | 570 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 71 |
| Conread position: | 9-773 |
| Cow position: | chr3:56146269-56147070 (view UCSC Genome Browser custom track) |
| Alignm length: | 806 |
| Alignm identity: | 566 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 51 |
| Conread position: | 14-666 |
| Cow position: | chr3:77424594-77425253 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 17 |
| Conread position: | 22-772 |
| Cow position: | chr3:38494207-38495007 (view UCSC Genome Browser custom track) |
| Alignm length: | 808 |
| Alignm identity: | 552 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 319 |
| Conread position: | 23-774 |
| Cow position: | chr3:65208166-65208945 (view UCSC Genome Browser custom track) |
| Alignm length: | 784 |
| Alignm identity: | 540 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 225 |
| Conread position: | 59-771 |
| Cow position: | chr3:29330286-29329523 (view UCSC Genome Browser custom track) |
| Alignm length: | 764 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 66-720 |
| Cow position: | chr3:20382040-20382751 (view UCSC Genome Browser custom track) |
| Alignm length: | 713 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 573 |
| Conread position: | 67-684 |
| Cow position: | chr3:2368326-2367659 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 467 |
| Conread position: | 192-772 |
| Cow position: | chr3:16076528-16077106 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 24 |
| Conread position: | 199-704 |
| Cow position: | chr3:56327277-56327806 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 85 |
| Conread position: | 217-652 |
| Cow position: | chr3:51364598-51364141 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 22 |
| Conread position: | 217-771 |
| Cow position: | chr3:44925249-44925830 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 22 |
| Conread position: | 231-630 |
| Cow position: | chr3:18462632-18462224 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 79 |
| Conread position: | 231-773 |
| Cow position: | chr3:19720456-19719889 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 69 |
| Conread position: | 291-773 |
| Cow position: | chr3:27864438-27864939 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 391 |
| Conread position: | 315-771 |
| Cow position: | chr3:16224170-16224652 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 389-641 |
| Cow position: | chr3:45864897-45864646 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 25, 58 |
| Conread position: | 407-773 |
| Cow position: | chr3:33634642-33635007 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 9, 90 |
Show alignments to all cow chromosomes.