Cow genome map
| Conread name: | Thy1-THY010032D09 |
| Conread position: | 1-169 |
| Cow position: | chr4:39270646-39270481 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-206 |
| Cow position: | chr4:25598743-25598540 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 79, 163 |
| Conread position: | 1-263 |
| Cow position: | chr4:4970777-4970523 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 221, 133 |
| Conread position: | 1-318 |
| Cow position: | chr4:54239726-54240059 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 67, 55 |
| Conread position: | 1-332 |
| Cow position: | chr4:45298327-45297992 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 212, 60 |
| Conread position: | 1-395 |
| Cow position: | chr4:28063881-28064300 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 53, 12 |
| Conread position: | 1-618 |
| Cow position: | chr4:13870765-13871380 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 85 |
| Conread position: | 1-640 |
| Cow position: | chr4:12588085-12588766 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 290 |
| Conread position: | 1-676 |
| Cow position: | chr4:16360671-16361396 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 24 |
| Conread position: | 1-733 |
| Cow position: | chr4:60263407-60262638 (view UCSC Genome Browser custom track) |
| Alignm length: | 780 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 129 |
| Conread position: | 1-769 |
| Cow position: | chr4:3126558-3127378 (view UCSC Genome Browser custom track) |
| Alignm length: | 823 |
| Alignm identity: | 567 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 63 |
| Conread position: | 1-771 |
| Cow position: | chr4:159916-160727 (view UCSC Genome Browser custom track) |
| Alignm length: | 815 |
| Alignm identity: | 567 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 63 |
| Conread position: | 1-771 |
| Cow position: | chr4:1929887-1929069 (view UCSC Genome Browser custom track) |
| Alignm length: | 820 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 63 |
| Conread position: | 1-771 |
| Cow position: | chr4:17093110-17092295 (view UCSC Genome Browser custom track) |
| Alignm length: | 821 |
| Alignm identity: | 573 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 14 |
| Conread position: | 1-771 |
| Cow position: | chr4:18423769-18422953 (view UCSC Genome Browser custom track) |
| Alignm length: | 821 |
| Alignm identity: | 558 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 63 |
| Conread position: | 1-771 |
| Cow position: | chr4:41955514-41956333 (view UCSC Genome Browser custom track) |
| Alignm length: | 823 |
| Alignm identity: | 569 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 63 |
| Conread position: | 1-771 |
| Cow position: | chr4:43881861-43882670 (view UCSC Genome Browser custom track) |
| Alignm length: | 818 |
| Alignm identity: | 561 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 114 |
| Conread position: | 1-771 |
| Cow position: | chr4:44726351-44727146 (view UCSC Genome Browser custom track) |
| Alignm length: | 810 |
| Alignm identity: | 555 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 74 |
| Conread position: | 1-773 |
| Cow position: | chr4:1049500-1048692 (view UCSC Genome Browser custom track) |
| Alignm length: | 817 |
| Alignm identity: | 567 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 26 |
| Conread position: | 1-773 |
| Cow position: | chr4:10882303-10883109 (view UCSC Genome Browser custom track) |
| Alignm length: | 821 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 165 |
| Conread position: | 1-773 |
| Cow position: | chr4:12240463-12239663 (view UCSC Genome Browser custom track) |
| Alignm length: | 815 |
| Alignm identity: | 567 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 114 |
| Conread position: | 1-773 |
| Cow position: | chr4:13494084-13494903 (view UCSC Genome Browser custom track) |
| Alignm length: | 821 |
| Alignm identity: | 565 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 810 |
| Conread position: | 1-773 |
| Cow position: | chr4:16639367-16640180 (view UCSC Genome Browser custom track) |
| Alignm length: | 822 |
| Alignm identity: | 569 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 323 |
| Conread position: | 1-773 |
| Cow position: | chr4:17925208-17924389 (view UCSC Genome Browser custom track) |
| Alignm length: | 826 |
| Alignm identity: | 572 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 1-773 |
| Cow position: | chr4:26877026-26876216 (view UCSC Genome Browser custom track) |
| Alignm length: | 821 |
| Alignm identity: | 575 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 338 |
| Conread position: | 1-773 |
| Cow position: | chr4:33072064-33071267 (view UCSC Genome Browser custom track) |
| Alignm length: | 815 |
| Alignm identity: | 565 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 64 |
| Conread position: | 1-773 |
| Cow position: | chr4:43318886-43318064 (view UCSC Genome Browser custom track) |
| Alignm length: | 824 |
| Alignm identity: | 578 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 321 |
| Conread position: | 1-774 |
| Cow position: | chr4:38930159-38930957 (view UCSC Genome Browser custom track) |
| Alignm length: | 813 |
| Alignm identity: | 557 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 47 |
| Conread position: | 3-771 |
| Cow position: | chr4:32212917-32213742 (view UCSC Genome Browser custom track) |
| Alignm length: | 828 |
| Alignm identity: | 560 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 21 |
| Conread position: | 3-774 |
| Cow position: | chr4:356667-357478 (view UCSC Genome Browser custom track) |
| Alignm length: | 817 |
| Alignm identity: | 566 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 60 |
| Conread position: | 6-771 |
| Cow position: | chr4:4416818-4417620 (view UCSC Genome Browser custom track) |
| Alignm length: | 814 |
| Alignm identity: | 560 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 58 |
| Conread position: | 8-338 |
| Cow position: | chr4:11836906-11836591 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 66, 106 |
| Conread position: | 8-338 |
| Cow position: | chr4:46665287-46665624 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 71, 121 |
| Conread position: | 8-409 |
| Cow position: | chr4:68110272-68109837 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 296 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 70, 318 |
| Conread position: | 8-560 |
| Cow position: | chr4:27300721-27300165 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 207 |
| Conread position: | 16-159 |
| Cow position: | chr4:53782577-53782434 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 60, 133 |
| Conread position: | 17-771 |
| Cow position: | chr4:41959660-41960469 (view UCSC Genome Browser custom track) |
| Alignm length: | 813 |
| Alignm identity: | 556 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 126 |
| Conread position: | 21-582 |
| Cow position: | chr4:26753846-26754399 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 361 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 47, 109 |
| Conread position: | 24-435 |
| Cow position: | chr4:2089173-2089612 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 303 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 62, 119 |
| Conread position: | 31-773 |
| Cow position: | chr4:14820074-14819332 (view UCSC Genome Browser custom track) |
| Alignm length: | 776 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 84 |
| Conread position: | 32-771 |
| Cow position: | chr4:19005526-19004761 (view UCSC Genome Browser custom track) |
| Alignm length: | 780 |
| Alignm identity: | 540 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 103 |
| Conread position: | 48-773 |
| Cow position: | chr4:6567191-6567951 (view UCSC Genome Browser custom track) |
| Alignm length: | 765 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 7 |
| Conread position: | 66-420 |
| Cow position: | chr4:9647198-9647568 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 149, 38 |
| Conread position: | 67-540 |
| Cow position: | chr4:69521363-69521850 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 336 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 22, 48 |
| Conread position: | 68-750 |
| Cow position: | chr4:34183803-34183129 (view UCSC Genome Browser custom track) |
| Alignm length: | 713 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 48 |
| Conread position: | 190-752 |
| Cow position: | chr4:52963160-52962588 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 54 |
| Conread position: | 207-771 |
| Cow position: | chr4:9355364-9355949 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 10 |
| Conread position: | 208-705 |
| Cow position: | chr4:65665417-65664908 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 375 |
| Conread position: | 217-629 |
| Cow position: | chr4:20067721-20067303 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 9 |
| Conread position: | 221-773 |
| Cow position: | chr4:14755667-14755105 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 105 |
| Conread position: | 223-706 |
| Cow position: | chr4:1952568-1952063 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 16 |
| Conread position: | 224-762 |
| Cow position: | chr4:21359227-21359793 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 23 |
| Conread position: | 241-668 |
| Cow position: | chr4:47522375-47522815 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 312 |
| Conread position: | 241-771 |
| Cow position: | chr4:17502317-17501761 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 245-771 |
| Cow position: | chr4:27334949-27335509 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 250-730 |
| Cow position: | chr4:14386844-14387351 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 273-771 |
| Cow position: | chr4:604676-605196 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 399 |
| Conread position: | 279-731 |
| Cow position: | chr4:21258215-21258705 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 339 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 21, 34 |
| Conread position: | 355-614 |
| Cow position: | chr4:64216534-64216281 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 29, 61 |
| Conread position: | 388-750 |
| Cow position: | chr4:11109897-11109525 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 69 |
Show alignments to all cow chromosomes.