Cow genome map
| Conread name: | Thy1-THY010032D09 |
| Conread position: | 1-175 |
| Cow position: | chr5:75624544-75624717 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 30, 45 |
| Conread position: | 1-188 |
| Cow position: | chr5:48832003-48832192 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 19, 156 |
| Conread position: | 1-213 |
| Cow position: | chr5:13046301-13046522 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1-213 |
| Cow position: | chr5:30580190-30580404 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 79, 122 |
| Conread position: | 1-309 |
| Cow position: | chr5:48855067-48855397 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 230 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 14, 104 |
| Conread position: | 1-338 |
| Cow position: | chr5:46629327-46628974 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 252 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 78, 13 |
| Conread position: | 1-351 |
| Cow position: | chr5:51770097-51769747 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 55 |
| Conread position: | 1-488 |
| Cow position: | chr5:34697455-34697979 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 126 |
| Conread position: | 1-517 |
| Cow position: | chr5:58548862-58549380 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 286 |
| Conread position: | 1-550 |
| Cow position: | chr5:27908416-27907827 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 41 |
| Conread position: | 1-567 |
| Cow position: | chr5:49519412-49520009 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 302 |
| Conread position: | 1-581 |
| Cow position: | chr5:34903043-34903596 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 131 |
| Conread position: | 1-590 |
| Cow position: | chr5:33187608-33188147 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 39 |
| Conread position: | 1-614 |
| Cow position: | chr5:1341181-1340535 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 126 |
| Conread position: | 1-665 |
| Cow position: | chr5:41956513-41955862 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 55 |
| Conread position: | 1-684 |
| Cow position: | chr5:35300949-35301684 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 63 |
| Conread position: | 1-700 |
| Cow position: | chr5:57481687-57480940 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 281 |
| Conread position: | 1-731 |
| Cow position: | chr5:23669278-23668512 (view UCSC Genome Browser custom track) |
| Alignm length: | 784 |
| Alignm identity: | 535 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 175 |
| Conread position: | 1-754 |
| Cow position: | chr5:48807887-48807076 (view UCSC Genome Browser custom track) |
| Alignm length: | 814 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 371 |
| Conread position: | 1-769 |
| Cow position: | chr5:47893694-47892899 (view UCSC Genome Browser custom track) |
| Alignm length: | 807 |
| Alignm identity: | 559 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 394 |
| Conread position: | 1-771 |
| Cow position: | chr5:46737724-46736921 (view UCSC Genome Browser custom track) |
| Alignm length: | 809 |
| Alignm identity: | 561 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 72 |
| Conread position: | 1-771 |
| Cow position: | chr5:49757818-49757038 (view UCSC Genome Browser custom track) |
| Alignm length: | 795 |
| Alignm identity: | 551 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 20 |
| Conread position: | 1-773 |
| Cow position: | chr5:2915301-2916108 (view UCSC Genome Browser custom track) |
| Alignm length: | 817 |
| Alignm identity: | 561 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 121 |
| Conread position: | 1-773 |
| Cow position: | chr5:3503254-3502431 (view UCSC Genome Browser custom track) |
| Alignm length: | 828 |
| Alignm identity: | 581 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 125 |
| Conread position: | 1-773 |
| Cow position: | chr5:4070060-4070888 (view UCSC Genome Browser custom track) |
| Alignm length: | 836 |
| Alignm identity: | 578 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 430 |
| Conread position: | 1-773 |
| Cow position: | chr5:7274703-7275504 (view UCSC Genome Browser custom track) |
| Alignm length: | 813 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 46 |
| Conread position: | 1-773 |
| Cow position: | chr5:24099518-24100322 (view UCSC Genome Browser custom track) |
| Alignm length: | 816 |
| Alignm identity: | 572 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 21 |
| Conread position: | 1-773 |
| Cow position: | chr5:55628843-55629658 (view UCSC Genome Browser custom track) |
| Alignm length: | 821 |
| Alignm identity: | 570 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 423 |
| Conread position: | 1-773 |
| Cow position: | chr5:64781164-64780340 (view UCSC Genome Browser custom track) |
| Alignm length: | 827 |
| Alignm identity: | 590 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 331 |
| Conread position: | 1-774 |
| Cow position: | chr5:10855964-10855144 (view UCSC Genome Browser custom track) |
| Alignm length: | 825 |
| Alignm identity: | 566 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 96 |
| Conread position: | 1-774 |
| Cow position: | chr5:18885675-18884875 (view UCSC Genome Browser custom track) |
| Alignm length: | 823 |
| Alignm identity: | 598 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 33 |
| Conread position: | 2-773 |
| Cow position: | chr5:37733200-37734027 (view UCSC Genome Browser custom track) |
| Alignm length: | 829 |
| Alignm identity: | 571 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 759 |
| Conread position: | 3-118 |
| Cow position: | chr5:18547586-18547703 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 5-773 |
| Cow position: | chr5:46668802-46669603 (view UCSC Genome Browser custom track) |
| Alignm length: | 808 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 74 |
| Conread position: | 6-617 |
| Cow position: | chr5:53006477-53007118 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 39 |
| Conread position: | 7-366 |
| Cow position: | chr5:14344573-14344197 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 131 |
| Conread position: | 8-631 |
| Cow position: | chr5:46808172-46808833 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 17 |
| Conread position: | 8-691 |
| Cow position: | chr5:18664656-18665353 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 17 |
| Conread position: | 8-769 |
| Cow position: | chr5:59061497-59062307 (view UCSC Genome Browser custom track) |
| Alignm length: | 815 |
| Alignm identity: | 571 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 17 |
| Conread position: | 8-771 |
| Cow position: | chr5:988202-987395 (view UCSC Genome Browser custom track) |
| Alignm length: | 810 |
| Alignm identity: | 557 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 13 |
| Conread position: | 8-771 |
| Cow position: | chr5:3965310-3966118 (view UCSC Genome Browser custom track) |
| Alignm length: | 818 |
| Alignm identity: | 554 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 7 |
| Conread position: | 8-771 |
| Cow position: | chr5:46664877-46665670 (view UCSC Genome Browser custom track) |
| Alignm length: | 816 |
| Alignm identity: | 543 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 14 |
| Conread position: | 8-771 |
| Cow position: | chr5:47830215-47829402 (view UCSC Genome Browser custom track) |
| Alignm length: | 817 |
| Alignm identity: | 564 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 7 |
| Conread position: | 8-773 |
| Cow position: | chr5:23687032-23686255 (view UCSC Genome Browser custom track) |
| Alignm length: | 800 |
| Alignm identity: | 554 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 13 |
| Conread position: | 9-771 |
| Cow position: | chr5:4018335-4017539 (view UCSC Genome Browser custom track) |
| Alignm length: | 814 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 55 |
| Conread position: | 9-773 |
| Cow position: | chr5:31100562-31099764 (view UCSC Genome Browser custom track) |
| Alignm length: | 808 |
| Alignm identity: | 570 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 15 |
| Conread position: | 10-140 |
| Cow position: | chr5:32282104-32281972 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 59, 54 |
| Conread position: | 26-773 |
| Cow position: | chr5:18560526-18559735 (view UCSC Genome Browser custom track) |
| Alignm length: | 795 |
| Alignm identity: | 548 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 100 |
| Conread position: | 31-632 |
| Cow position: | chr5:15375598-15376216 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 91 |
| Conread position: | 42-673 |
| Cow position: | chr5:47077897-47078548 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 21 |
| Conread position: | 53-771 |
| Cow position: | chr5:50870532-50871280 (view UCSC Genome Browser custom track) |
| Alignm length: | 763 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 11 |
| Conread position: | 107-771 |
| Cow position: | chr5:10813791-10813077 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 130-557 |
| Cow position: | chr5:32951884-32952345 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 154 |
| Conread position: | 190-618 |
| Cow position: | chr5:52434801-52435251 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 296 |
| Conread position: | 217-461 |
| Cow position: | chr5:55653750-55653490 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 148, 22 |
| Conread position: | 223-733 |
| Cow position: | chr5:53945939-53946462 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 84 |
| Conread position: | 227-773 |
| Cow position: | chr5:13046762-13047313 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 10 |
| Conread position: | 355-518 |
| Cow position: | chr5:23236156-23236327 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
Show alignments to all cow chromosomes.