Cow genome map
| Conread name: | Thy1-THY010032D09 |
| Conread position: | 1-126 |
| Cow position: | chr6:17627785-17627659 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 81, 70 |
| Conread position: | 1-157 |
| Cow position: | chr6:39438757-39438915 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-207 |
| Cow position: | chr6:36527292-36527501 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 7, 114 |
| Conread position: | 1-207 |
| Cow position: | chr6:55542272-55542064 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-213 |
| Cow position: | chr6:7178293-7178084 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-213 |
| Cow position: | chr6:20560111-20559897 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-213 |
| Cow position: | chr6:24240045-24240258 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 79, 101 |
| Conread position: | 1-213 |
| Cow position: | chr6:29312493-29312707 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-214 |
| Cow position: | chr6:34004294-34004086 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-363 |
| Cow position: | chr6:29279811-29280185 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 71, 60 |
| Conread position: | 1-450 |
| Cow position: | chr6:58027667-58028144 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 288 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 79, 14 |
| Conread position: | 1-483 |
| Cow position: | chr6:17047045-17047574 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 349 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-484 |
| Cow position: | chr6:3276380-3275854 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 507 |
| Conread position: | 1-493 |
| Cow position: | chr6:51086935-51087465 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 59 |
| Conread position: | 1-582 |
| Cow position: | chr6:33899259-33898664 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 77 |
| Conread position: | 1-587 |
| Cow position: | chr6:13944901-13945529 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 63 |
| Conread position: | 1-590 |
| Cow position: | chr6:16053099-16053731 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 63 |
| Conread position: | 1-615 |
| Cow position: | chr6:11871654-11871005 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 63 |
| Conread position: | 1-770 |
| Cow position: | chr6:21973662-21974477 (view UCSC Genome Browser custom track) |
| Alignm length: | 819 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 569 |
| Conread position: | 1-771 |
| Cow position: | chr6:27529004-27528209 (view UCSC Genome Browser custom track) |
| Alignm length: | 812 |
| Alignm identity: | 553 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 53 |
| Conread position: | 1-772 |
| Cow position: | chr6:28104863-28104053 (view UCSC Genome Browser custom track) |
| Alignm length: | 818 |
| Alignm identity: | 552 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 74 |
| Conread position: | 1-772 |
| Cow position: | chr6:30273903-30273082 (view UCSC Genome Browser custom track) |
| Alignm length: | 822 |
| Alignm identity: | 569 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-773 |
| Cow position: | chr6:50615-49793 (view UCSC Genome Browser custom track) |
| Alignm length: | 825 |
| Alignm identity: | 569 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 513 |
| Conread position: | 1-773 |
| Cow position: | chr6:703209-704024 (view UCSC Genome Browser custom track) |
| Alignm length: | 820 |
| Alignm identity: | 570 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 126 |
| Conread position: | 1-773 |
| Cow position: | chr6:914624-915446 (view UCSC Genome Browser custom track) |
| Alignm length: | 827 |
| Alignm identity: | 560 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 421 |
| Conread position: | 1-773 |
| Cow position: | chr6:1382324-1381533 (view UCSC Genome Browser custom track) |
| Alignm length: | 803 |
| Alignm identity: | 553 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 24 |
| Conread position: | 1-773 |
| Cow position: | chr6:1535582-1534769 (view UCSC Genome Browser custom track) |
| Alignm length: | 818 |
| Alignm identity: | 560 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 13 |
| Conread position: | 1-773 |
| Cow position: | chr6:1821621-1820816 (view UCSC Genome Browser custom track) |
| Alignm length: | 812 |
| Alignm identity: | 570 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 327 |
| Conread position: | 1-773 |
| Cow position: | chr6:3888510-3887704 (view UCSC Genome Browser custom track) |
| Alignm length: | 816 |
| Alignm identity: | 557 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 101 |
| Conread position: | 1-773 |
| Cow position: | chr6:28169896-28170720 (view UCSC Genome Browser custom track) |
| Alignm length: | 831 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 53 |
| Conread position: | 1-773 |
| Cow position: | chr6:34891132-34890318 (view UCSC Genome Browser custom track) |
| Alignm length: | 822 |
| Alignm identity: | 579 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 481 |
| Conread position: | 1-773 |
| Cow position: | chr6:39333877-39333063 (view UCSC Genome Browser custom track) |
| Alignm length: | 827 |
| Alignm identity: | 583 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 329 |
| Conread position: | 1-773 |
| Cow position: | chr6:40553582-40552770 (view UCSC Genome Browser custom track) |
| Alignm length: | 825 |
| Alignm identity: | 572 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 325 |
| Conread position: | 1-773 |
| Cow position: | chr6:40866332-40865514 (view UCSC Genome Browser custom track) |
| Alignm length: | 825 |
| Alignm identity: | 575 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 558 |
| Conread position: | 1-773 |
| Cow position: | chr6:41228437-41229256 (view UCSC Genome Browser custom track) |
| Alignm length: | 824 |
| Alignm identity: | 567 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 144 |
| Conread position: | 1-774 |
| Cow position: | chr6:10609878-10610656 (view UCSC Genome Browser custom track) |
| Alignm length: | 815 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 13 |
| Conread position: | 5-223 |
| Cow position: | chr6:4258755-4258540 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 76, 96 |
| Conread position: | 8-207 |
| Cow position: | chr6:25215215-25215404 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 8-214 |
| Cow position: | chr6:25792758-25792552 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 74, 145 |
| Conread position: | 8-334 |
| Cow position: | chr6:35875713-35875382 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 231 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 72, 249 |
| Conread position: | 8-706 |
| Cow position: | chr6:2375698-2376420 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 13 |
| Conread position: | 8-745 |
| Cow position: | chr6:10250595-10249823 (view UCSC Genome Browser custom track) |
| Alignm length: | 785 |
| Alignm identity: | 545 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 55 |
| Conread position: | 8-749 |
| Cow position: | chr6:3150262-3151024 (view UCSC Genome Browser custom track) |
| Alignm length: | 773 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 7 |
| Conread position: | 8-770 |
| Cow position: | chr6:39910335-39911138 (view UCSC Genome Browser custom track) |
| Alignm length: | 811 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 17 |
| Conread position: | 8-771 |
| Cow position: | chr6:28187816-28187028 (view UCSC Genome Browser custom track) |
| Alignm length: | 808 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 17 |
| Conread position: | 8-771 |
| Cow position: | chr6:40276088-40276893 (view UCSC Genome Browser custom track) |
| Alignm length: | 816 |
| Alignm identity: | 557 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 17 |
| Conread position: | 8-773 |
| Cow position: | chr6:51731089-51731890 (view UCSC Genome Browser custom track) |
| Alignm length: | 813 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 94 |
| Conread position: | 17-213 |
| Cow position: | chr6:50634959-50635161 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 62, 115 |
| Conread position: | 18-750 |
| Cow position: | chr6:40379623-40378842 (view UCSC Genome Browser custom track) |
| Alignm length: | 784 |
| Alignm identity: | 548 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 35 |
| Conread position: | 31-772 |
| Cow position: | chr6:58065760-58066527 (view UCSC Genome Browser custom track) |
| Alignm length: | 779 |
| Alignm identity: | 548 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 27 |
| Conread position: | 59-771 |
| Cow position: | chr6:2877637-2876874 (view UCSC Genome Browser custom track) |
| Alignm length: | 765 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 106 |
| Conread position: | 59-771 |
| Cow position: | chr6:45586999-45587758 (view UCSC Genome Browser custom track) |
| Alignm length: | 765 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 69 |
| Conread position: | 66-773 |
| Cow position: | chr6:9842982-9843716 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 27 |
| Conread position: | 66-773 |
| Cow position: | chr6:59617173-59617893 (view UCSC Genome Browser custom track) |
| Alignm length: | 747 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 74 |
| Conread position: | 72-489 |
| Cow position: | chr6:46603181-46602722 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 116-682 |
| Cow position: | chr6:32072608-32072057 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 55 |
| Conread position: | 187-768 |
| Cow position: | chr6:11723995-11723392 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 69 |
| Conread position: | 203-733 |
| Cow position: | chr6:12626923-12627470 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 9 |
| Conread position: | 205-551 |
| Cow position: | chr6:68028149-68028508 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 37, 110 |
| Conread position: | 212-771 |
| Cow position: | chr6:28703483-28702899 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 5 |
| Conread position: | 215-753 |
| Cow position: | chr6:44001899-44002463 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 257 |
| Conread position: | 217-496 |
| Cow position: | chr6:28766808-28766512 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 148, 22 |
| Conread position: | 217-770 |
| Cow position: | chr6:44149316-44148739 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 22 |
| Conread position: | 226-576 |
| Cow position: | chr6:28134155-28134516 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 12 |
| Conread position: | 226-614 |
| Cow position: | chr6:47625301-47625710 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 14 |
| Conread position: | 228-749 |
| Cow position: | chr6:7178043-7177505 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 18 |
| Conread position: | 230-469 |
| Cow position: | chr6:1404074-1403816 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 231-665 |
| Cow position: | chr6:25215463-25215919 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 20 |
| Conread position: | 235-727 |
| Cow position: | chr6:15966555-15966045 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 91 |
| Conread position: | 255-593 |
| Cow position: | chr6:31301593-31301937 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 237 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 98, 13 |
| Conread position: | 273-773 |
| Cow position: | chr6:5749213-5749737 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 5 |
| Conread position: | 291-769 |
| Cow position: | chr6:13848375-13848875 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 191 |
| Conread position: | 315-773 |
| Cow position: | chr6:24240736-24241214 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 461 |
Show alignments to all cow chromosomes.