Cow genome map
| Conread name: | Thy1-THY010032D09 |
| Conread position: | 1-174 |
| Cow position: | chr9:5515340-5515515 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 59, 160 |
| Conread position: | 1-175 |
| Cow position: | chr9:52292326-52292495 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 81, 53 |
| Conread position: | 1-205 |
| Cow position: | chr9:8165959-8165760 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 78, 127 |
| Conread position: | 1-205 |
| Cow position: | chr9:30435495-30435698 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 78, 13 |
| Conread position: | 1-207 |
| Cow position: | chr9:31808498-31808706 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 1-366 |
| Cow position: | chr9:10322724-10323113 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 149 |
| Conread position: | 1-366 |
| Cow position: | chr9:22089435-22089815 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 80, 312 |
| Conread position: | 1-366 |
| Cow position: | chr9:33243405-33243036 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 176, 73 |
| Conread position: | 1-366 |
| Cow position: | chr9:50729215-50728849 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 258 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 81, 38 |
| Conread position: | 1-464 |
| Cow position: | chr9:3763923-3764410 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 21 |
| Conread position: | 1-469 |
| Cow position: | chr9:60277094-60276587 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 125 |
| Conread position: | 1-480 |
| Cow position: | chr9:4649677-4649166 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 114 |
| Conread position: | 1-483 |
| Cow position: | chr9:29027290-29026763 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-503 |
| Cow position: | chr9:47003116-47003641 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 74 |
| Conread position: | 1-503 |
| Cow position: | chr9:59481875-59481336 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 324 |
| Conread position: | 1-560 |
| Cow position: | chr9:39731137-39730548 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 36 |
| Conread position: | 1-590 |
| Cow position: | chr9:1981196-1981811 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 52 |
| Conread position: | 1-592 |
| Cow position: | chr9:10937515-10938145 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 492 |
| Conread position: | 1-618 |
| Cow position: | chr9:32969869-32970524 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 564 |
| Conread position: | 1-693 |
| Cow position: | chr9:37970274-37969547 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 63 |
| Conread position: | 1-724 |
| Cow position: | chr9:30488515-30489277 (view UCSC Genome Browser custom track) |
| Alignm length: | 773 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 54 |
| Conread position: | 1-753 |
| Cow position: | chr9:42310601-42311413 (view UCSC Genome Browser custom track) |
| Alignm length: | 815 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 13 |
| Conread position: | 1-761 |
| Cow position: | chr9:19158618-19157799 (view UCSC Genome Browser custom track) |
| Alignm length: | 820 |
| Alignm identity: | 553 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-769 |
| Cow position: | chr9:28678893-28679693 (view UCSC Genome Browser custom track) |
| Alignm length: | 808 |
| Alignm identity: | 552 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 63 |
| Conread position: | 1-771 |
| Cow position: | chr9:130246-129456 (view UCSC Genome Browser custom track) |
| Alignm length: | 805 |
| Alignm identity: | 542 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 282 |
| Conread position: | 1-771 |
| Cow position: | chr9:2871250-2872071 (view UCSC Genome Browser custom track) |
| Alignm length: | 829 |
| Alignm identity: | 552 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 114 |
| Conread position: | 1-771 |
| Cow position: | chr9:4942886-4942064 (view UCSC Genome Browser custom track) |
| Alignm length: | 829 |
| Alignm identity: | 565 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 114 |
| Conread position: | 1-771 |
| Cow position: | chr9:64015720-64014932 (view UCSC Genome Browser custom track) |
| Alignm length: | 802 |
| Alignm identity: | 538 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 63 |
| Conread position: | 1-772 |
| Cow position: | chr9:7061160-7060325 (view UCSC Genome Browser custom track) |
| Alignm length: | 839 |
| Alignm identity: | 566 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 126 |
| Conread position: | 1-772 |
| Cow position: | chr9:37161892-37161076 (view UCSC Genome Browser custom track) |
| Alignm length: | 822 |
| Alignm identity: | 581 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 326 |
| Conread position: | 1-773 |
| Cow position: | chr9:1995469-1994665 (view UCSC Genome Browser custom track) |
| Alignm length: | 818 |
| Alignm identity: | 567 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 450 |
| Conread position: | 1-773 |
| Cow position: | chr9:6250220-6251026 (view UCSC Genome Browser custom track) |
| Alignm length: | 820 |
| Alignm identity: | 558 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 191 |
| Conread position: | 1-773 |
| Cow position: | chr9:7016802-7017580 (view UCSC Genome Browser custom track) |
| Alignm length: | 798 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 48 |
| Conread position: | 1-773 |
| Cow position: | chr9:17305055-17304234 (view UCSC Genome Browser custom track) |
| Alignm length: | 824 |
| Alignm identity: | 572 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 137 |
| Conread position: | 1-773 |
| Cow position: | chr9:27783108-27783926 (view UCSC Genome Browser custom track) |
| Alignm length: | 820 |
| Alignm identity: | 578 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 801 |
| Conread position: | 1-773 |
| Cow position: | chr9:28022727-28023541 (view UCSC Genome Browser custom track) |
| Alignm length: | 817 |
| Alignm identity: | 564 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 340 |
| Conread position: | 1-773 |
| Cow position: | chr9:59537018-59537842 (view UCSC Genome Browser custom track) |
| Alignm length: | 829 |
| Alignm identity: | 565 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 126 |
| Conread position: | 3-335 |
| Cow position: | chr9:9647045-9647377 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 77, 223 |
| Conread position: | 7-333 |
| Cow position: | chr9:8284137-8283796 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 100, 74 |
| Conread position: | 8-207 |
| Cow position: | chr9:5004900-5005098 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 49, 55 |
| Conread position: | 8-753 |
| Cow position: | chr9:30673298-30674099 (view UCSC Genome Browser custom track) |
| Alignm length: | 804 |
| Alignm identity: | 560 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 750 |
| Conread position: | 8-771 |
| Cow position: | chr9:2212068-2212879 (view UCSC Genome Browser custom track) |
| Alignm length: | 813 |
| Alignm identity: | 546 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 14 |
| Conread position: | 8-771 |
| Cow position: | chr9:17063453-17062650 (view UCSC Genome Browser custom track) |
| Alignm length: | 814 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 7 |
| Conread position: | 8-771 |
| Cow position: | chr9:30827667-30828480 (view UCSC Genome Browser custom track) |
| Alignm length: | 817 |
| Alignm identity: | 558 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 17 |
| Conread position: | 8-773 |
| Cow position: | chr9:18508894-18508087 (view UCSC Genome Browser custom track) |
| Alignm length: | 811 |
| Alignm identity: | 560 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 736 |
| Conread position: | 8-773 |
| Cow position: | chr9:21410225-21411047 (view UCSC Genome Browser custom track) |
| Alignm length: | 825 |
| Alignm identity: | 572 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 506 |
| Conread position: | 10-570 |
| Cow position: | chr9:22654506-22655110 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 15-773 |
| Cow position: | chr9:4282902-4283699 (view UCSC Genome Browser custom track) |
| Alignm length: | 814 |
| Alignm identity: | 571 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 482 |
| Conread position: | 62-773 |
| Cow position: | chr9:3309609-3310355 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 54 |
| Conread position: | 104-771 |
| Cow position: | chr9:38677170-38677884 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 109-519 |
| Cow position: | chr9:26553639-26554037 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 280 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 255, 42 |
| Conread position: | 126-753 |
| Cow position: | chr9:25034516-25033845 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 552 |
| Conread position: | 193-773 |
| Cow position: | chr9:25923825-25923251 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 400 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 51, 10 |
| Conread position: | 213-773 |
| Cow position: | chr9:2172105-2172681 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 89 |
| Conread position: | 217-517 |
| Cow position: | chr9:7105266-7104950 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 150, 22 |
| Conread position: | 217-730 |
| Cow position: | chr9:50094076-50093538 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 22 |
| Conread position: | 217-771 |
| Cow position: | chr9:1075025-1074435 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 22 |
| Conread position: | 223-773 |
| Cow position: | chr9:9562881-9562302 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 95 |
| Conread position: | 227-774 |
| Cow position: | chr9:12912949-12913525 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 77 |
| Conread position: | 241-453 |
| Cow position: | chr9:43664904-43665118 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 118, 45 |
| Conread position: | 257-771 |
| Cow position: | chr9:8781708-8781188 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 20 |
| Conread position: | 291-773 |
| Cow position: | chr9:9707364-9707858 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 22 |
| Conread position: | 300-773 |
| Cow position: | chr9:26102015-26101528 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 12 |
| Conread position: | 318-773 |
| Cow position: | chr9:29332513-29332998 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 318 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 50, 94 |
| Conread position: | 403-690 |
| Cow position: | chr9:28000882-28001183 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 215 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 77, 0 |
Show alignments to all cow chromosomes.