Cow genome map

Conread name: Thy1-THY010032D09

Conread position: 1-149
Cow position: chrX:34346056-34346201 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 37, 0

Conread position: 1-173
Cow position: chrX:5304982-5305157 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 1-207
Cow position: chrX:16700145-16700354 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 153
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 79, 0

Conread position: 1-207
Cow position: chrX:21580293-21580501 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 148
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 57, 70

Conread position: 1-213
Cow position: chrX:30138749-30138536 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 155
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 83, 149

Conread position: 1-340
Cow position: chrX:4411476-4411840 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 264
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 79, 55

Conread position: 1-366
Cow position: chrX:5864222-5864612 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 270
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 67, 20

Conread position: 1-366
Cow position: chrX:17613198-17612826 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 247
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 30, 56

Conread position: 1-421
Cow position: chrX:18553257-18553702 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 200

Conread position: 1-447
Cow position: chrX:26999412-26999875 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 108

Conread position: 1-469
Cow position: chrX:16463488-16462981 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 63

Conread position: 1-552
Cow position: chrX:21059611-21060186 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 131

Conread position: 1-574
Cow position: chrX:23040296-23039683 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 313

Conread position: 1-576
Cow position: chrX:15309106-15308496 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 126

Conread position: 1-614
Cow position: chrX:10385133-10385783 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 83

Conread position: 1-618
Cow position: chrX:19875341-19875994 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 53

Conread position: 1-618
Cow position: chrX:29097023-29097685 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 109

Conread position: 1-618
Cow position: chrX:41102638-41101985 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 505

Conread position: 1-726
Cow position: chrX:26528803-26529566 (view UCSC Genome Browser custom track)
Alignm length: 771
Alignm identity: 539
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 114

Conread position: 1-730
Cow position: chrX:21269228-21268456 (view UCSC Genome Browser custom track)
Alignm length: 782
Alignm identity: 538
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 315

Conread position: 1-740
Cow position: chrX:5669809-5669093 (view UCSC Genome Browser custom track)
Alignm length: 765
Alignm identity: 488
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 74, 18

Conread position: 1-741
Cow position: chrX:21830357-21831130 (view UCSC Genome Browser custom track)
Alignm length: 775
Alignm identity: 527
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 737

Conread position: 1-761
Cow position: chrX:27316103-27316915 (view UCSC Genome Browser custom track)
Alignm length: 813
Alignm identity: 551
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 0

Conread position: 1-769
Cow position: chrX:26757787-26756988 (view UCSC Genome Browser custom track)
Alignm length: 807
Alignm identity: 546
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 272

Conread position: 1-770
Cow position: chrX:31199389-31200202 (view UCSC Genome Browser custom track)
Alignm length: 820
Alignm identity: 542
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 326

Conread position: 1-771
Cow position: chrX:8588992-8589827 (view UCSC Genome Browser custom track)
Alignm length: 841
Alignm identity: 567
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 7

Conread position: 1-771
Cow position: chrX:11148506-11147686 (view UCSC Genome Browser custom track)
Alignm length: 825
Alignm identity: 566
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 24

Conread position: 1-771
Cow position: chrX:16276474-16277296 (view UCSC Genome Browser custom track)
Alignm length: 823
Alignm identity: 548
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 0

Conread position: 1-771
Cow position: chrX:27425498-27424675 (view UCSC Genome Browser custom track)
Alignm length: 825
Alignm identity: 560
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 63

Conread position: 1-771
Cow position: chrX:29935424-29936245 (view UCSC Genome Browser custom track)
Alignm length: 823
Alignm identity: 552
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 63

Conread position: 1-771
Cow position: chrX:30201904-30201090 (view UCSC Genome Browser custom track)
Alignm length: 816
Alignm identity: 549
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 251

Conread position: 1-773
Cow position: chrX:971610-972427 (view UCSC Genome Browser custom track)
Alignm length: 825
Alignm identity: 578
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 125

Conread position: 1-773
Cow position: chrX:1547805-1548625 (view UCSC Genome Browser custom track)
Alignm length: 825
Alignm identity: 583
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 752

Conread position: 1-773
Cow position: chrX:5296716-5295903 (view UCSC Genome Browser custom track)
Alignm length: 816
Alignm identity: 542
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 101

Conread position: 1-773
Cow position: chrX:18952854-18952028 (view UCSC Genome Browser custom track)
Alignm length: 828
Alignm identity: 567
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 126

Conread position: 1-773
Cow position: chrX:23277854-23278672 (view UCSC Genome Browser custom track)
Alignm length: 824
Alignm identity: 571
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 97

Conread position: 1-773
Cow position: chrX:23455189-23454370 (view UCSC Genome Browser custom track)
Alignm length: 822
Alignm identity: 584
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 42

Conread position: 1-773
Cow position: chrX:27593160-27592340 (view UCSC Genome Browser custom track)
Alignm length: 825
Alignm identity: 579
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 560

Conread position: 1-773
Cow position: chrX:30231269-30230462 (view UCSC Genome Browser custom track)
Alignm length: 822
Alignm identity: 573
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 127

Conread position: 1-773
Cow position: chrX:30365958-30365154 (view UCSC Genome Browser custom track)
Alignm length: 818
Alignm identity: 563
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 287

Conread position: 1-773
Cow position: chrX:35386353-35385587 (view UCSC Genome Browser custom track)
Alignm length: 808
Alignm identity: 540
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 103

Conread position: 1-773
Cow position: chrX:38148423-38149240 (view UCSC Genome Browser custom track)
Alignm length: 821
Alignm identity: 570
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 543

Conread position: 1-774
Cow position: chrX:17666958-17666148 (view UCSC Genome Browser custom track)
Alignm length: 820
Alignm identity: 581
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 274

Conread position: 2-213
Cow position: chrX:21971647-21971859 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 152
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 53, 60

Conread position: 2-771
Cow position: chrX:5322896-5322081 (view UCSC Genome Browser custom track)
Alignm length: 824
Alignm identity: 546
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 13

Conread position: 4-351
Cow position: chrX:9093405-9093779 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 259
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 72, 128

Conread position: 4-693
Cow position: chrX:15126399-15125664 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 324

Conread position: 7-427
Cow position: chrX:39763434-39763859 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 289
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 11, 49

Conread position: 7-590
Cow position: chrX:15486926-15486339 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 70

Conread position: 8-499
Cow position: chrX:8962737-8962206 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 17

Conread position: 8-614
Cow position: chrX:24476357-24475721 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 7

Conread position: 8-753
Cow position: chrX:6281920-6281154 (view UCSC Genome Browser custom track)
Alignm length: 778
Alignm identity: 534
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 262

Conread position: 8-753
Cow position: chrX:27961693-27962460 (view UCSC Genome Browser custom track)
Alignm length: 789
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 121

Conread position: 8-771
Cow position: chrX:674366-673560 (view UCSC Genome Browser custom track)
Alignm length: 815
Alignm identity: 565
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 7

Conread position: 8-771
Cow position: chrX:7031298-7032100 (view UCSC Genome Browser custom track)
Alignm length: 813
Alignm identity: 552
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 7

Conread position: 8-771
Cow position: chrX:11422707-11423518 (view UCSC Genome Browser custom track)
Alignm length: 815
Alignm identity: 552
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 17

Conread position: 8-771
Cow position: chrX:13075860-13075056 (view UCSC Genome Browser custom track)
Alignm length: 813
Alignm identity: 545
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 17

Conread position: 8-771
Cow position: chrX:29172926-29172120 (view UCSC Genome Browser custom track)
Alignm length: 810
Alignm identity: 550
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 17

Conread position: 8-771
Cow position: chrX:35530700-35531502 (view UCSC Genome Browser custom track)
Alignm length: 814
Alignm identity: 554
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 7

Conread position: 8-773
Cow position: chrX:13412298-13411481 (view UCSC Genome Browser custom track)
Alignm length: 819
Alignm identity: 560
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 56

Conread position: 8-773
Cow position: chrX:18535286-18536048 (view UCSC Genome Browser custom track)
Alignm length: 793
Alignm identity: 549
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 126

Conread position: 8-773
Cow position: chrX:23020159-23020944 (view UCSC Genome Browser custom track)
Alignm length: 792
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 16

Conread position: 8-773
Cow position: chrX:26766366-26765549 (view UCSC Genome Browser custom track)
Alignm length: 819
Alignm identity: 549
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 591

Conread position: 9-711
Cow position: chrX:12702866-12702115 (view UCSC Genome Browser custom track)
Alignm length: 759
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 16

Conread position: 10-590
Cow position: chrX:34219147-34219752 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 105

Conread position: 14-773
Cow position: chrX:30170990-30170205 (view UCSC Genome Browser custom track)
Alignm length: 804
Alignm identity: 535
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 49

Conread position: 15-773
Cow position: chrX:41850361-41849575 (view UCSC Genome Browser custom track)
Alignm length: 801
Alignm identity: 552
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 31

Conread position: 15-773
Cow position: chrX:41888156-41887338 (view UCSC Genome Browser custom track)
Alignm length: 831
Alignm identity: 526
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 14, 117

Conread position: 17-699
Cow position: chrX:5651788-5651100 (view UCSC Genome Browser custom track)
Alignm length: 713
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 37

Conread position: 18-771
Cow position: chrX:7752745-7753546 (view UCSC Genome Browser custom track)
Alignm length: 809
Alignm identity: 544
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 33

Conread position: 18-771
Cow position: chrX:17477580-17476773 (view UCSC Genome Browser custom track)
Alignm length: 810
Alignm identity: 557
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 46

Conread position: 31-771
Cow position: chrX:26399246-26398479 (view UCSC Genome Browser custom track)
Alignm length: 773
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 33

Conread position: 45-696
Cow position: chrX:15600032-15600717 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 87

Conread position: 59-769
Cow position: chrX:3084252-3083492 (view UCSC Genome Browser custom track)
Alignm length: 762
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 468

Conread position: 66-771
Cow position: chrX:13096367-13095617 (view UCSC Genome Browser custom track)
Alignm length: 755
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 459

Conread position: 75-773
Cow position: chrX:20695914-20695175 (view UCSC Genome Browser custom track)
Alignm length: 746
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 25

Conread position: 94-753
Cow position: chrX:27083889-27084602 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 221

Conread position: 103-699
Cow position: chrX:18451910-18452556 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 0

Conread position: 127-773
Cow position: chrX:5356868-5356175 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 0

Conread position: 131-771
Cow position: chrX:24771904-24771215 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 0

Conread position: 205-366
Cow position: chrX:22128676-22128525 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 9, 44

Conread position: 212-630
Cow position: chrX:29792971-29792532 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 297
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 27, 93

Conread position: 217-770
Cow position: chrX:16684767-16684190 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 22

Conread position: 217-771
Cow position: chrX:20035332-20034754 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 22

Conread position: 217-771
Cow position: chrX:28506200-28505622 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 22

Conread position: 223-683
Cow position: chrX:39694717-39695199 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 428

Conread position: 223-773
Cow position: chrX:21753357-21752793 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 27

Conread position: 229-478
Cow position: chrX:12284023-12284281 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 183
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 135, 8

Conread position: 229-613
Cow position: chrX:25613138-25613531 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 265
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 36, 17

Conread position: 231-753
Cow position: chrX:27495795-27496342 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 242

Conread position: 231-771
Cow position: chrX:28554714-28555280 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 279

Conread position: 255-774
Cow position: chrX:30070777-30071318 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 63

Conread position: 291-691
Cow position: chrX:3580172-3580600 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 212

Conread position: 291-771
Cow position: chrX:37957914-37957408 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 0

Conread position: 295-730
Cow position: chrX:37850276-37850737 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 0

Conread position: 355-704
Cow position: chrX:6241220-6240852 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 253
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 33, 0

Conread position: 403-773
Cow position: chrX:22127871-22127484 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 80

Show alignments to all cow chromosomes.