Cow genome map

Conread name: Thy1-THY010033A06

Conread position: 292-740
Cow position: chr11:9423843-9424300 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 85

Conread position: 310-934
Cow position: chr11:43831843-43831231 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 188

Conread position: 312-540
Cow position: chr11:79999813-80000026 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 164
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 6, 34

Conread position: 314-641
Cow position: chr11:1775081-1774744 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 310

Conread position: 314-918
Cow position: chr11:77772731-77772132 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 18

Conread position: 315-531
Cow position: chr11:33103698-33103476 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 165
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 11, 0

Conread position: 319-483
Cow position: chr11:21121218-21121376 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 98, 89

Conread position: 319-740
Cow position: chr11:52859418-52859851 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 234

Conread position: 319-757
Cow position: chr11:51177452-51177879 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 95

Conread position: 319-865
Cow position: chr11:57061836-57062377 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 88

Conread position: 319-914
Cow position: chr11:12790763-12791328 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 183

Conread position: 319-931
Cow position: chr11:5221470-5220855 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 26

Conread position: 319-931
Cow position: chr11:24008041-24008675 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 120

Conread position: 319-935
Cow position: chr11:25807797-25807151 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 23

Conread position: 320-452
Cow position: chr11:3241281-3241418 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 98, 0

Conread position: 320-502
Cow position: chr11:59473360-59473543 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 133
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 96, 51

Conread position: 320-518
Cow position: chr11:41726857-41727060 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 142
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 96, 0

Conread position: 320-528
Cow position: chr11:25185188-25185397 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 148
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 94, 125

Conread position: 320-543
Cow position: chr11:43435097-43435325 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 166
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 97, 0

Conread position: 320-871
Cow position: chr11:35252031-35251474 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 138

Conread position: 320-885
Cow position: chr11:40574799-40574237 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 10

Conread position: 320-932
Cow position: chr11:82528853-82529460 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 80

Conread position: 321-543
Cow position: chr11:9971019-9970797 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 159
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 95, 12

Conread position: 321-574
Cow position: chr11:26787377-26787634 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 176
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 15, 52

Conread position: 321-579
Cow position: chr11:2338503-2338747 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 177
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 198, 76

Conread position: 321-586
Cow position: chr11:87169654-87169381 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 198
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 100, 38

Conread position: 322-920
Cow position: chr11:69491382-69491980 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 135

Conread position: 326-560
Cow position: chr11:23738818-23738580 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 179
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 92, 45

Conread position: 329-518
Cow position: chr11:79893645-79893837 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 135
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 89, 23

Conread position: 330-935
Cow position: chr11:39831251-39830652 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 63

Conread position: 335-933
Cow position: chr11:18154275-18153670 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 38

Conread position: 336-520
Cow position: chr11:52655788-52655604 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 132
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 81, 163

Conread position: 336-542
Cow position: chr11:17192299-17192090 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 158
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 79, 30

Conread position: 336-551
Cow position: chr11:29004413-29004640 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 155
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 82, 0

Conread position: 336-874
Cow position: chr11:77756783-77756232 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 192

Conread position: 336-934
Cow position: chr11:55119461-55120051 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 77

Conread position: 339-512
Cow position: chr11:60512747-60512909 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 138
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 41, 0

Conread position: 340-592
Cow position: chr11:58313223-58313476 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 149
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 78, 120

Conread position: 346-930
Cow position: chr11:25972925-25972364 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 212

Conread position: 348-899
Cow position: chr11:10877243-10877802 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 6

Conread position: 363-807
Cow position: chr11:25856191-25856650 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 122

Conread position: 371-592
Cow position: chr11:7130956-7131179 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 161
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 49, 38

Conread position: 390-666
Cow position: chr11:60822700-60822417 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 211
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 23, 70

Conread position: 403-576
Cow position: chr11:56962612-56962433 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 15, 144

Conread position: 407-714
Cow position: chr11:34024611-34024929 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 75

Conread position: 420-783
Cow position: chr11:21893405-21893058 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 12

Conread position: 425-936
Cow position: chr11:22851104-22851625 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 225

Conread position: 431-910
Cow position: chr11:57153588-57153097 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 128

Conread position: 434-901
Cow position: chr11:34303541-34304017 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 175

Conread position: 441-920
Cow position: chr11:34761630-34761159 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 112

Conread position: 443-932
Cow position: chr11:77763416-77762939 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 52

Conread position: 443-933
Cow position: chr11:57753302-57752795 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 10

Conread position: 458-852
Cow position: chr11:77820165-77819782 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 37

Conread position: 510-935
Cow position: chr11:27817348-27816934 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 35

Conread position: 513-923
Cow position: chr11:34397638-34398053 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 32

Conread position: 528-933
Cow position: chr11:18452969-18452571 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 17

Conread position: 545-901
Cow position: chr11:8087968-8087611 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 100

Conread position: 545-936
Cow position: chr11:21544237-21544624 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 267
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 59, 96

Conread position: 546-905
Cow position: chr11:58793812-58793451 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 252
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 68, 46

Conread position: 557-923
Cow position: chr11:74216329-74215973 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 233
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 50, 37

Conread position: 572-932
Cow position: chr11:35506756-35507096 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 237
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 128, 0

Conread position: 575-906
Cow position: chr11:70605606-70605933 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 219
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 216, 20

Conread position: 578-936
Cow position: chr11:74171387-74171032 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 259
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 29, 77

Conread position: 596-935
Cow position: chr11:18370842-18371171 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 227
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 52, 112

Conread position: 598-932
Cow position: chr11:29785345-29785691 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 250
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 12, 46

Conread position: 598-933
Cow position: chr11:80002974-80003296 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 222
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 229, 59

Conread position: 598-936
Cow position: chr11:15885542-15885880 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 57

Conread position: 602-857
Cow position: chr11:80269594-80269345 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 190
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 55, 33

Conread position: 615-932
Cow position: chr11:58579871-58580163 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 222
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 40, 0

Conread position: 615-936
Cow position: chr11:12064971-12065277 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 228
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 156, 42

Conread position: 630-933
Cow position: chr11:35502613-35502316 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 195
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 199, 16

Conread position: 633-906
Cow position: chr11:77713377-77713103 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 186
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 142, 22

Conread position: 639-933
Cow position: chr11:15265544-15265241 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 203
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 19, 59

Conread position: 639-933
Cow position: chr11:87168487-87168203 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 204
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 21, 47

Conread position: 642-930
Cow position: chr11:53663422-53663704 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 207
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 44, 15

Conread position: 655-932
Cow position: chr11:44064181-44064468 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 49

Conread position: 657-872
Cow position: chr11:46107923-46107718 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 156
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 126, 26

Conread position: 661-935
Cow position: chr11:21909843-21909548 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 219
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 30, 87

Conread position: 670-933
Cow position: chr11:19567355-19567612 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 195
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 119, 34

Conread position: 699-936
Cow position: chr11:54204480-54204243 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 15

Conread position: 705-935
Cow position: chr11:64101395-64101636 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 177
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 69, 193

Conread position: 714-901
Cow position: chr11:34265786-34265977 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 136
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 87, 0

Conread position: 720-933
Cow position: chr11:65777397-65777185 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 164
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 49, 89

Conread position: 722-891
Cow position: chr11:27610794-27610970 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 133
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 49, 103

Conread position: 722-933
Cow position: chr11:38009643-38009435 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 59, 23

Conread position: 725-930
Cow position: chr11:53755202-53754985 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 157
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 51, 9

Conread position: 754-923
Cow position: chr11:3261111-3261281 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 23, 63

Conread position: 770-936
Cow position: chr11:85005847-85006016 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 44, 0

Conread position: 782-936
Cow position: chr11:80780558-80780709 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 122
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 46, 29

Conread position: 783-935
Cow position: chr11:30660727-30660877 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 121
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 44, 28

Conread position: 783-935
Cow position: chr11:53331217-53331368 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 44, 23

Conread position: 785-936
Cow position: chr11:16363955-16363806 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 126
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 68, 26

Conread position: 802-935
Cow position: chr11:73007317-73007453 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 813-933
Cow position: chr11:53270641-53270528 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 13, 0

Show alignments to all cow chromosomes.