Cow genome map
| Conread name: | Thy1-THY010033A06 |
| Conread position: | 300-764 |
| Cow position: | chr12:21066123-21066585 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 14 |
| Conread position: | 312-537 |
| Cow position: | chr12:11306654-11306432 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 93, 142 |
| Conread position: | 314-891 |
| Cow position: | chr12:27423197-27423775 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 79 |
| Conread position: | 314-933 |
| Cow position: | chr12:10162026-10161387 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 235 |
| Conread position: | 317-518 |
| Cow position: | chr12:37339950-37340155 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 101, 8 |
| Conread position: | 317-932 |
| Cow position: | chr12:33277851-33278460 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 71 |
| Conread position: | 319-681 |
| Cow position: | chr12:29760698-29760338 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 203 |
| Conread position: | 319-725 |
| Cow position: | chr12:23892471-23892871 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 78 |
| Conread position: | 319-922 |
| Cow position: | chr12:26311144-26310555 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 78 |
| Conread position: | 320-494 |
| Cow position: | chr12:12711280-12711102 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 98, 163 |
| Conread position: | 320-560 |
| Cow position: | chr12:22026874-22027117 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 98, 22 |
| Conread position: | 320-582 |
| Cow position: | chr12:37510697-37510435 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 98, 26 |
| Conread position: | 321-557 |
| Cow position: | chr12:22473912-22474149 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 100, 127 |
| Conread position: | 321-882 |
| Cow position: | chr12:1993637-1993060 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 52 |
| Conread position: | 321-935 |
| Cow position: | chr12:16961548-16962162 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 61 |
| Conread position: | 330-557 |
| Cow position: | chr12:8625972-8625758 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 337-556 |
| Cow position: | chr12:12982914-12982682 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 372-669 |
| Cow position: | chr12:23498128-23498430 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 222 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 49, 87 |
| Conread position: | 384-666 |
| Cow position: | chr12:25513888-25514169 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 37, 18 |
| Conread position: | 387-935 |
| Cow position: | chr12:2838237-2837698 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 70 |
| Conread position: | 400-575 |
| Cow position: | chr12:3067058-3067232 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 28, 120 |
| Conread position: | 456-892 |
| Cow position: | chr12:36975351-36974909 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 160 |
| Conread position: | 460-936 |
| Cow position: | chr12:8468100-8467629 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 47 |
| Conread position: | 474-883 |
| Cow position: | chr12:7025354-7024934 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 161 |
| Conread position: | 543-924 |
| Cow position: | chr12:3896728-3896356 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 258 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 19, 37 |
| Conread position: | 567-931 |
| Cow position: | chr12:8767445-8767069 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 276 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 26, 65 |
| Conread position: | 570-715 |
| Cow position: | chr12:38632193-38632341 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 24, 86 |
| Conread position: | 571-922 |
| Cow position: | chr12:28214288-28214642 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 54 |
| Conread position: | 578-932 |
| Cow position: | chr12:20227182-20226821 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 76 |
| Conread position: | 578-936 |
| Cow position: | chr12:33277412-33277052 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 255 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 22, 51 |
| Conread position: | 597-905 |
| Cow position: | chr12:27437748-27437448 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 71, 22 |
| Conread position: | 602-922 |
| Cow position: | chr12:7936845-7936533 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 48 |
| Conread position: | 602-930 |
| Cow position: | chr12:11306414-11306081 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 53 |
| Conread position: | 609-930 |
| Cow position: | chr12:12709934-12709634 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 185, 46 |
| Conread position: | 611-882 |
| Cow position: | chr12:11352580-11352315 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 47 |
| Conread position: | 629-913 |
| Cow position: | chr12:4348076-4347799 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 30, 47 |
| Conread position: | 630-900 |
| Cow position: | chr12:7086360-7086628 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 158, 25 |
| Conread position: | 655-929 |
| Cow position: | chr12:27718104-27718372 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 121, 27 |
| Conread position: | 678-935 |
| Cow position: | chr12:33350640-33350896 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 198 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 97, 26 |
| Conread position: | 689-935 |
| Cow position: | chr12:34475914-34476158 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 94, 15 |
| Conread position: | 690-933 |
| Cow position: | chr12:26810583-26810353 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 137, 14 |
| Conread position: | 690-936 |
| Cow position: | chr12:14236320-14236554 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 6, 31 |
| Conread position: | 690-936 |
| Cow position: | chr12:29759178-29758923 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 703-935 |
| Cow position: | chr12:11187560-11187792 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 110, 50 |
| Conread position: | 721-931 |
| Cow position: | chr12:42854111-42854323 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 18, 113 |
| Conread position: | 727-936 |
| Cow position: | chr12:29801535-29801755 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 736-934 |
| Cow position: | chr12:27111231-27111433 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 36, 19 |
| Conread position: | 779-932 |
| Cow position: | chr12:20792133-20791985 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 785-933 |
| Cow position: | chr12:5896653-5896507 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 785-936 |
| Cow position: | chr12:39710039-39710188 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 787-930 |
| Cow position: | chr12:26824469-26824613 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 42, 22 |
Show alignments to all cow chromosomes.