Cow genome map
| Conread name: | Thy1-THY010033A06 |
| Conread position: | 288-932 |
| Cow position: | chr13:38362317-38361689 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 24 |
| Conread position: | 299-934 |
| Cow position: | chr13:34265117-34264500 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 98 |
| Conread position: | 310-931 |
| Cow position: | chr13:55406644-55407270 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 199 |
| Conread position: | 314-474 |
| Cow position: | chr13:25956531-25956368 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 319-548 |
| Cow position: | chr13:43384620-43384857 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 319-558 |
| Cow position: | chr13:46349498-46349739 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 14 |
| Conread position: | 319-919 |
| Cow position: | chr13:38535392-38534808 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 141 |
| Conread position: | 319-933 |
| Cow position: | chr13:45497251-45497868 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 38 |
| Conread position: | 319-936 |
| Cow position: | chr13:37497723-37498313 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 57 |
| Conread position: | 320-531 |
| Cow position: | chr13:47591135-47591340 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 93, 23 |
| Conread position: | 320-543 |
| Cow position: | chr13:46637121-46637339 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 98, 53 |
| Conread position: | 320-556 |
| Cow position: | chr13:1368026-1367782 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 77, 235 |
| Conread position: | 321-933 |
| Cow position: | chr13:12325100-12325692 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 201 |
| Conread position: | 325-551 |
| Cow position: | chr13:22277179-22277409 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 79, 160 |
| Conread position: | 336-542 |
| Cow position: | chr13:1839389-1839170 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 336-788 |
| Cow position: | chr13:39487339-39487784 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 44 |
| Conread position: | 342-516 |
| Cow position: | chr13:24373402-24373226 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 346-542 |
| Cow position: | chr13:25716100-25715915 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 348-550 |
| Cow position: | chr13:61849819-61850017 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 75, 127 |
| Conread position: | 360-922 |
| Cow position: | chr13:34884997-34885577 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 132 |
| Conread position: | 382-932 |
| Cow position: | chr13:19115477-19116010 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 11 |
| Conread position: | 386-555 |
| Cow position: | chr13:28598633-28598807 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 418-840 |
| Cow position: | chr13:34336357-34336757 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 294 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 187, 53 |
| Conread position: | 418-866 |
| Cow position: | chr13:46464725-46464282 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 15 |
| Conread position: | 434-885 |
| Cow position: | chr13:47325795-47325339 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 21 |
| Conread position: | 440-892 |
| Cow position: | chr13:51240843-51241294 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 10 |
| Conread position: | 443-648 |
| Cow position: | chr13:11441469-11441670 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 164, 102 |
| Conread position: | 452-712 |
| Cow position: | chr13:62272001-62271748 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 145, 86 |
| Conread position: | 453-692 |
| Cow position: | chr13:9103777-9103547 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 71, 92 |
| Conread position: | 456-665 |
| Cow position: | chr13:59997900-59997688 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 137, 89 |
| Conread position: | 459-641 |
| Cow position: | chr13:698298-698495 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 91, 29 |
| Conread position: | 467-898 |
| Cow position: | chr13:25955478-25955050 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 57 |
| Conread position: | 474-882 |
| Cow position: | chr13:17169346-17169747 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 92 |
| Conread position: | 487-935 |
| Cow position: | chr13:44144254-44143799 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 310 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 113, 129 |
| Conread position: | 511-934 |
| Cow position: | chr13:24404186-24403764 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 46 |
| Conread position: | 521-872 |
| Cow position: | chr13:21878494-21878129 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 264 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 80, 127 |
| Conread position: | 533-781 |
| Cow position: | chr13:26943004-26943254 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 23, 61 |
| Conread position: | 545-838 |
| Cow position: | chr13:21826377-21826646 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 545-924 |
| Cow position: | chr13:33239720-33240115 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 282 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 13, 120 |
| Conread position: | 545-932 |
| Cow position: | chr13:43848883-43848508 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 42, 8 |
| Conread position: | 545-936 |
| Cow position: | chr13:15731356-15730961 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 104 |
| Conread position: | 548-786 |
| Cow position: | chr13:43803130-43803375 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 14, 120 |
| Conread position: | 554-773 |
| Cow position: | chr13:20656546-20656768 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 46, 97 |
| Conread position: | 570-936 |
| Cow position: | chr13:43385030-43385405 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 24 |
| Conread position: | 574-923 |
| Cow position: | chr13:17597015-17597362 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 20, 79 |
| Conread position: | 596-878 |
| Cow position: | chr13:27844142-27843873 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 61, 23 |
| Conread position: | 596-900 |
| Cow position: | chr13:51142743-51142445 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 170, 18 |
| Conread position: | 596-923 |
| Cow position: | chr13:27529037-27529355 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 83, 25 |
| Conread position: | 597-907 |
| Cow position: | chr13:28605682-28605999 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 60 |
| Conread position: | 597-929 |
| Cow position: | chr13:11223155-11222830 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 240 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 7, 59 |
| Conread position: | 598-935 |
| Cow position: | chr13:14080176-14079840 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 179, 59 |
| Conread position: | 601-924 |
| Cow position: | chr13:6921310-6920997 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 237 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 13, 56 |
| Conread position: | 602-928 |
| Cow position: | chr13:19015192-19014865 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 130, 48 |
| Conread position: | 603-935 |
| Cow position: | chr13:12213753-12214090 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 172, 49 |
| Conread position: | 604-786 |
| Cow position: | chr13:47280006-47279824 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 64, 53 |
| Conread position: | 628-932 |
| Cow position: | chr13:26777533-26777829 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 630-933 |
| Cow position: | chr13:4796125-4796435 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 74, 25 |
| Conread position: | 634-925 |
| Cow position: | chr13:20490314-20490027 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 24, 80 |
| Conread position: | 637-935 |
| Cow position: | chr13:698696-698983 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 217 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 139, 19 |
| Conread position: | 639-931 |
| Cow position: | chr13:26034576-26034296 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 189, 22 |
| Conread position: | 653-936 |
| Cow position: | chr13:22193734-22194018 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 212 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 140, 46 |
| Conread position: | 657-936 |
| Cow position: | chr13:18597037-18596770 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 130, 47 |
| Conread position: | 659-931 |
| Cow position: | chr13:57611549-57611829 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 118, 45 |
| Conread position: | 662-910 |
| Cow position: | chr13:11778200-11778430 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 115, 44 |
| Conread position: | 664-905 |
| Cow position: | chr13:10854683-10854436 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 111, 40 |
| Conread position: | 688-862 |
| Cow position: | chr13:9103259-9103082 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 83, 16 |
| Conread position: | 688-936 |
| Cow position: | chr13:48580630-48580381 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 16 |
| Conread position: | 706-936 |
| Cow position: | chr13:25877493-25877716 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 27, 9 |
| Conread position: | 720-929 |
| Cow position: | chr13:4659682-4659466 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 165 |
| Conread position: | 739-930 |
| Cow position: | chr13:15489927-15490127 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 37, 80 |
| Conread position: | 755-936 |
| Cow position: | chr13:27795821-27796008 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 22, 64 |
| Conread position: | 770-936 |
| Cow position: | chr13:30951023-30950853 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 14, 29 |
| Conread position: | 776-936 |
| Cow position: | chr13:51177605-51177763 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 31 |
| Conread position: | 779-930 |
| Cow position: | chr13:18541412-18541557 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 785-933 |
| Cow position: | chr13:57746310-57746458 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 44, 26 |
| Conread position: | 808-936 |
| Cow position: | chr13:20496478-20496349 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 846-932 |
| Cow position: | chr13:45876012-45876098 (view UCSC Genome Browser custom track) |
| Alignm length: | 87 |
| Alignm identity: | 75 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.