Cow genome map
| Conread name: | Thy1-THY010033A06 |
| Conread position: | 310-744 |
| Cow position: | chr15:9072319-9072770 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 258 |
| Conread position: | 311-515 |
| Cow position: | chr15:21802051-21802259 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 107, 194 |
| Conread position: | 314-555 |
| Cow position: | chr15:14811550-14811314 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 314-935 |
| Cow position: | chr15:53728620-53728009 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 91 |
| Conread position: | 319-511 |
| Cow position: | chr15:5912776-5912583 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 319-543 |
| Cow position: | chr15:9700902-9700671 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 319-543 |
| Cow position: | chr15:39288423-39288192 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 99, 200 |
| Conread position: | 319-547 |
| Cow position: | chr15:1893029-1892804 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 96, 133 |
| Conread position: | 319-585 |
| Cow position: | chr15:4623591-4623321 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 201 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 97, 123 |
| Conread position: | 319-630 |
| Cow position: | chr15:40065582-40065907 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 138 |
| Conread position: | 319-875 |
| Cow position: | chr15:37470315-37469749 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 93 |
| Conread position: | 319-904 |
| Cow position: | chr15:10581048-10581643 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 171 |
| Conread position: | 319-934 |
| Cow position: | chr15:53712485-53713106 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 85 |
| Conread position: | 319-936 |
| Cow position: | chr15:23265432-23266045 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 60 |
| Conread position: | 319-936 |
| Cow position: | chr15:44797637-44796995 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 29 |
| Conread position: | 320-436 |
| Cow position: | chr15:8630171-8630289 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 320-543 |
| Cow position: | chr15:23172106-23171885 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 174, 43 |
| Conread position: | 320-936 |
| Cow position: | chr15:37492043-37491465 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 83 |
| Conread position: | 321-556 |
| Cow position: | chr15:49200639-49200879 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 321-556 |
| Cow position: | chr15:52204652-52204888 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 96, 52 |
| Conread position: | 322-543 |
| Cow position: | chr15:43275186-43275410 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 336-936 |
| Cow position: | chr15:25683353-25683968 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 235 |
| Conread position: | 337-934 |
| Cow position: | chr15:52868497-52869086 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 185 |
| Conread position: | 338-543 |
| Cow position: | chr15:19781636-19781433 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 80, 32 |
| Conread position: | 362-668 |
| Cow position: | chr15:31918279-31917985 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 57, 98 |
| Conread position: | 373-935 |
| Cow position: | chr15:17641905-17642463 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 146 |
| Conread position: | 374-924 |
| Cow position: | chr15:6523729-6523188 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 69 |
| Conread position: | 382-923 |
| Cow position: | chr15:18403647-18404174 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 149 |
| Conread position: | 391-559 |
| Cow position: | chr15:14974465-14974292 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 30, 65 |
| Conread position: | 393-903 |
| Cow position: | chr15:11997456-11997994 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 63 |
| Conread position: | 394-775 |
| Cow position: | chr15:27972053-27971676 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 30, 45 |
| Conread position: | 397-933 |
| Cow position: | chr15:31935264-31935799 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 70 |
| Conread position: | 405-933 |
| Cow position: | chr15:37633090-37633632 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 52 |
| Conread position: | 418-560 |
| Cow position: | chr15:35041834-35041976 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 443-931 |
| Cow position: | chr15:30569931-30570406 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 344, 116 |
| Conread position: | 456-680 |
| Cow position: | chr15:50243103-50243322 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 144, 51 |
| Conread position: | 511-932 |
| Cow position: | chr15:578889-579312 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 141 |
| Conread position: | 514-903 |
| Cow position: | chr15:12048898-12048507 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 268 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 86, 146 |
| Conread position: | 545-905 |
| Cow position: | chr15:14811060-14810699 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 117 |
| Conread position: | 545-920 |
| Cow position: | chr15:2436987-2437354 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 263 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 48, 22 |
| Conread position: | 547-933 |
| Cow position: | chr15:16669554-16669157 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 32 |
| Conread position: | 555-885 |
| Cow position: | chr15:38902576-38902253 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 223 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 22, 13 |
| Conread position: | 568-813 |
| Cow position: | chr15:36864661-36864419 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 38, 85 |
| Conread position: | 570-781 |
| Cow position: | chr15:35042277-35042488 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 30, 87 |
| Conread position: | 570-794 |
| Cow position: | chr15:26365317-26365536 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 570-905 |
| Cow position: | chr15:1887970-1888311 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 245 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 30, 91 |
| Conread position: | 570-936 |
| Cow position: | chr15:19813598-19813230 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 196, 50 |
| Conread position: | 602-932 |
| Cow position: | chr15:26866787-26867095 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 184, 53 |
| Conread position: | 603-904 |
| Cow position: | chr15:32325469-32325173 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 255, 33 |
| Conread position: | 607-923 |
| Cow position: | chr15:7443971-7443670 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 220, 43 |
| Conread position: | 609-932 |
| Cow position: | chr15:3593503-3593189 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 229 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 108, 42 |
| Conread position: | 611-779 |
| Cow position: | chr15:1241066-1240898 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 93, 46 |
| Conread position: | 611-933 |
| Cow position: | chr15:4622818-4622509 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 173, 44 |
| Conread position: | 618-905 |
| Cow position: | chr15:12283120-12283404 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 26 |
| Conread position: | 621-931 |
| Cow position: | chr15:52131791-52132105 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 34 |
| Conread position: | 625-935 |
| Cow position: | chr15:21802505-21802809 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 30 |
| Conread position: | 626-923 |
| Cow position: | chr15:16972184-16971890 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 158, 29 |
| Conread position: | 627-936 |
| Cow position: | chr15:8630296-8630603 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 231 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 149, 28 |
| Conread position: | 629-932 |
| Cow position: | chr15:9437459-9437762 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 53, 26 |
| Conread position: | 655-832 |
| Cow position: | chr15:36582574-36582393 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 22, 50 |
| Conread position: | 655-922 |
| Cow position: | chr15:49279486-49279209 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 74, 49 |
| Conread position: | 659-936 |
| Cow position: | chr15:9428039-9427739 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 21, 42 |
| Conread position: | 665-934 |
| Cow position: | chr15:39809499-39809774 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 203 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 115, 38 |
| Conread position: | 668-933 |
| Cow position: | chr15:11287394-11287119 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 38 |
| Conread position: | 674-931 |
| Cow position: | chr15:5912386-5912119 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 201 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 104, 30 |
| Conread position: | 683-936 |
| Cow position: | chr15:582850-583114 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 55, 34 |
| Conread position: | 684-936 |
| Cow position: | chr15:21182007-21182265 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 106, 20 |
| Conread position: | 691-893 |
| Cow position: | chr15:53335368-53335581 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 84, 13 |
| Conread position: | 702-936 |
| Cow position: | chr15:50243322-50243554 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 70, 51 |
| Conread position: | 703-936 |
| Cow position: | chr15:28608149-28607900 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 776-922 |
| Cow position: | chr15:13081432-13081577 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 11, 31 |
| Conread position: | 785-932 |
| Cow position: | chr15:41807418-41807275 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 785-934 |
| Cow position: | chr15:1992778-1992924 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 42, 26 |
| Conread position: | 785-936 |
| Cow position: | chr15:35067053-35067202 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 35, 26 |
| Conread position: | 785-936 |
| Cow position: | chr15:36278072-36277925 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 44, 21 |
Show alignments to all cow chromosomes.