Cow genome map

Conread name: Thy1-THY010033A06

Conread position: 314-551
Cow position: chr16:19445752-19445993 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 177
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 7, 160

Conread position: 314-931
Cow position: chr16:41680792-41680166 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 14

Conread position: 314-932
Cow position: chr16:23035320-23034702 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 126

Conread position: 317-517
Cow position: chr16:12324085-12324285 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 137
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 103, 20

Conread position: 317-543
Cow position: chr16:55674691-55674468 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 168
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 18, 48

Conread position: 319-468
Cow position: chr16:6309803-6309953 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 94, 50

Conread position: 319-537
Cow position: chr16:4443815-4444024 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 155
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 70, 40

Conread position: 319-561
Cow position: chr16:4015308-4015557 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 172
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 50, 170

Conread position: 319-561
Cow position: chr16:5477377-5477137 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 169
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 98, 52

Conread position: 319-634
Cow position: chr16:341245-341553 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 225
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 33, 113

Conread position: 319-676
Cow position: chr16:19152676-19153047 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 149

Conread position: 319-715
Cow position: chr16:17867502-17867112 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 143

Conread position: 319-931
Cow position: chr16:22786063-22785449 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 251

Conread position: 319-934
Cow position: chr16:13043801-13044445 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 13

Conread position: 319-934
Cow position: chr16:14799757-14799142 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 33

Conread position: 319-934
Cow position: chr16:47781278-47781901 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 249

Conread position: 320-554
Cow position: chr16:47729007-47729242 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 167
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 94, 150

Conread position: 320-560
Cow position: chr16:52900907-52900668 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 166
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 98, 19

Conread position: 320-561
Cow position: chr16:5593420-5593654 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 170
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 76, 17

Conread position: 320-605
Cow position: chr16:45551818-45552088 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 215
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 17, 11

Conread position: 320-904
Cow position: chr16:15508918-15509499 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 80

Conread position: 320-935
Cow position: chr16:53547609-53547018 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 148

Conread position: 321-561
Cow position: chr16:4677000-4677251 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 178
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 99, 198

Conread position: 321-714
Cow position: chr16:52814192-52813834 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 282
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 96, 30

Conread position: 322-636
Cow position: chr16:15734555-15734871 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 265

Conread position: 322-664
Cow position: chr16:36911059-36910710 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 44

Conread position: 330-525
Cow position: chr16:10838122-10838316 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 139
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 88, 5

Conread position: 330-548
Cow position: chr16:45157486-45157269 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 168
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 88, 132

Conread position: 336-632
Cow position: chr16:4856490-4856187 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 58

Conread position: 337-928
Cow position: chr16:4295526-4294938 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 9

Conread position: 338-934
Cow position: chr16:12243559-12242954 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 43

Conread position: 340-517
Cow position: chr16:16559017-16558836 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 138
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 76, 19

Conread position: 346-930
Cow position: chr16:43850822-43850234 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 48

Conread position: 356-570
Cow position: chr16:20857377-20857596 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 158
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 62, 157

Conread position: 359-589
Cow position: chr16:2375982-2375759 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 172
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 193, 46

Conread position: 362-933
Cow position: chr16:30572590-30572029 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 421, 72

Conread position: 372-559
Cow position: chr16:23747567-23747377 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 138
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 46, 6

Conread position: 373-936
Cow position: chr16:16118490-16119060 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 136

Conread position: 390-726
Cow position: chr16:14443961-14444294 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 166

Conread position: 404-935
Cow position: chr16:53516561-53516048 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 52

Conread position: 415-733
Cow position: chr16:31375095-31374783 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 239
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 29, 42

Conread position: 420-898
Cow position: chr16:11161499-11161927 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 443-792
Cow position: chr16:47391150-47391479 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 74

Conread position: 445-664
Cow position: chr16:5131645-5131427 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 158
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 155, 123

Conread position: 492-775
Cow position: chr16:42406010-42406293 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 70

Conread position: 497-682
Cow position: chr16:6031479-6031299 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 132
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 113, 48

Conread position: 529-932
Cow position: chr16:48894629-48894229 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 37

Conread position: 542-936
Cow position: chr16:16608010-16608392 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 263
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 39, 20

Conread position: 545-919
Cow position: chr16:17003635-17004005 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 259
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 17, 7

Conread position: 554-928
Cow position: chr16:45057615-45058002 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 271
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 40, 108

Conread position: 568-934
Cow position: chr16:23301568-23301930 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 260
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 89, 33

Conread position: 588-932
Cow position: chr16:2371550-2371222 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 252
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 22, 68

Conread position: 600-905
Cow position: chr16:11751927-11752231 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 204
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 9, 119

Conread position: 600-933
Cow position: chr16:52650258-52649921 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 242
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 179, 57

Conread position: 601-934
Cow position: chr16:23878605-23878959 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 245
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 56, 49

Conread position: 604-933
Cow position: chr16:46029868-46030184 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 213
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 224, 100

Conread position: 625-935
Cow position: chr16:2722767-2722444 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 232
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 16, 82

Conread position: 630-928
Cow position: chr16:56373587-56373290 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 223
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 151, 26

Conread position: 630-932
Cow position: chr16:43850216-43849924 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 216
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 154, 25

Conread position: 644-936
Cow position: chr16:13209631-13209917 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 197
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 44, 39

Conread position: 648-931
Cow position: chr16:37508391-37508677 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 208
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 66, 56

Conread position: 655-918
Cow position: chr16:37441596-37441331 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 190
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 126, 49

Conread position: 656-799
Cow position: chr16:13416976-13416830 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 113, 48

Conread position: 657-900
Cow position: chr16:14423217-14423468 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 186
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 5, 48

Conread position: 674-932
Cow position: chr16:4854632-4854378 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 190
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 139, 30

Conread position: 697-934
Cow position: chr16:32352472-32352713 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 178
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 82, 7

Conread position: 699-936
Cow position: chr16:14084794-14084550 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 185
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 80, 121

Conread position: 702-932
Cow position: chr16:24038453-24038694 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 175
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 76, 0

Conread position: 707-936
Cow position: chr16:14444542-14444772 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 170
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 71, 28

Conread position: 720-936
Cow position: chr16:27075555-27075761 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 158
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 108, 61

Conread position: 721-936
Cow position: chr16:52731518-52731718 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 159
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 106, 56

Conread position: 722-936
Cow position: chr16:31374529-31374305 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 167
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 79, 31

Conread position: 724-936
Cow position: chr16:17219069-17218862 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 159
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 47, 90

Conread position: 739-931
Cow position: chr16:51456715-51456910 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 138
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 44, 67

Conread position: 740-904
Cow position: chr16:16622450-16622294 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 36, 13

Conread position: 741-930
Cow position: chr16:52813521-52813340 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 144
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 46, 71

Conread position: 766-936
Cow position: chr16:37024818-37024654 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 130
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 61, 45

Conread position: 770-919
Cow position: chr16:38397900-38397755 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 57, 15

Conread position: 785-936
Cow position: chr16:10198441-10198591 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 120
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 43, 27

Conread position: 809-935
Cow position: chr16:14824509-14824383 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 103
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 19, 39

Conread position: 836-936
Cow position: chr16:7086281-7086181 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 85
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.