Cow genome map
| Conread name: | Thy1-THY010033A06 |
| Conread position: | 312-899 |
| Cow position: | chr17:701419-701999 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 40 |
| Conread position: | 317-931 |
| Cow position: | chr17:1310237-1309645 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 15 |
| Conread position: | 319-525 |
| Cow position: | chr17:15450379-15450587 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 102, 40 |
| Conread position: | 319-543 |
| Cow position: | chr17:13688170-13687953 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 319-621 |
| Cow position: | chr17:30329696-30329991 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 51 |
| Conread position: | 319-769 |
| Cow position: | chr17:20208806-20208343 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 186 |
| Conread position: | 319-935 |
| Cow position: | chr17:28847640-28847007 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 84 |
| Conread position: | 320-495 |
| Cow position: | chr17:26532857-26533035 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 320-559 |
| Cow position: | chr17:30204684-30204939 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 98, 32 |
| Conread position: | 320-564 |
| Cow position: | chr17:4440286-4440045 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 98, 17 |
| Conread position: | 321-518 |
| Cow position: | chr17:933462-933664 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 83, 75 |
| Conread position: | 322-543 |
| Cow position: | chr17:11374673-11374447 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 336-562 |
| Cow position: | chr17:8035756-8035987 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 339-674 |
| Cow position: | chr17:13236657-13236322 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 149 |
| Conread position: | 341-723 |
| Cow position: | chr17:24608862-24609253 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 117 |
| Conread position: | 345-864 |
| Cow position: | chr17:30358460-30357976 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 66 |
| Conread position: | 362-796 |
| Cow position: | chr17:25117032-25117462 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 38 |
| Conread position: | 418-548 |
| Cow position: | chr17:36149229-36149359 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 418-556 |
| Cow position: | chr17:7210473-7210612 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 441-934 |
| Cow position: | chr17:12842380-12842903 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 5 |
| Conread position: | 443-925 |
| Cow position: | chr17:32451523-32451025 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 204 |
| Conread position: | 479-932 |
| Cow position: | chr17:2735886-2736351 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 144 |
| Conread position: | 520-936 |
| Cow position: | chr17:19789637-19789238 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 43 |
| Conread position: | 539-932 |
| Cow position: | chr17:43143570-43143154 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 270 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 64, 323 |
| Conread position: | 546-934 |
| Cow position: | chr17:18418005-18417597 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 294 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 24, 121 |
| Conread position: | 547-782 |
| Cow position: | chr17:6980507-6980272 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 49, 78 |
| Conread position: | 566-924 |
| Cow position: | chr17:14376590-14376923 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 45, 11 |
| Conread position: | 574-935 |
| Cow position: | chr17:7210893-7211252 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 268 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 26, 56 |
| Conread position: | 595-935 |
| Cow position: | chr17:27622612-27622275 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 236 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 96, 40 |
| Conread position: | 597-872 |
| Cow position: | chr17:3849028-3849306 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 158, 57 |
| Conread position: | 600-825 |
| Cow position: | chr17:24152145-24152360 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 184, 44 |
| Conread position: | 602-919 |
| Cow position: | chr17:24337158-24337461 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 56 |
| Conread position: | 616-860 |
| Cow position: | chr17:27623659-27623416 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 75, 20 |
| Conread position: | 618-933 |
| Cow position: | chr17:13671370-13671066 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 209, 19 |
| Conread position: | 639-925 |
| Cow position: | chr17:11225517-11225812 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 219 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 13, 33 |
| Conread position: | 639-931 |
| Cow position: | chr17:3223697-3223983 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 23, 66 |
| Conread position: | 639-935 |
| Cow position: | chr17:30330668-30330945 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 144, 35 |
| Conread position: | 646-929 |
| Cow position: | chr17:17501006-17500733 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 147, 55 |
| Conread position: | 664-932 |
| Cow position: | chr17:37722774-37722514 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 199 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 164, 40 |
| Conread position: | 672-932 |
| Cow position: | chr17:1364711-1364451 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 13, 138 |
| Conread position: | 692-931 |
| Cow position: | chr17:26481208-26481457 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 19, 5 |
| Conread position: | 702-933 |
| Cow position: | chr17:404256-404502 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 704-934 |
| Cow position: | chr17:10850948-10850719 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 128, 66 |
| Conread position: | 719-921 |
| Cow position: | chr17:10261531-10261735 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 64, 7 |
| Conread position: | 729-934 |
| Cow position: | chr17:41899177-41898966 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 39, 88 |
| Conread position: | 738-889 |
| Cow position: | chr17:37166541-37166393 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 39, 75 |
| Conread position: | 775-934 |
| Cow position: | chr17:4625243-4625398 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 116, 53 |
| Conread position: | 776-936 |
| Cow position: | chr17:13235994-13236152 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 51, 31 |
| Conread position: | 776-936 |
| Cow position: | chr17:34319651-34319493 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 53, 35 |
| Conread position: | 779-936 |
| Cow position: | chr17:10436865-10436713 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 6 |
| Conread position: | 810-931 |
| Cow position: | chr17:25117587-25117709 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 811-936 |
| Cow position: | chr17:3797787-3797913 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 823-935 |
| Cow position: | chr17:45212542-45212430 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.