Cow genome map
| Conread name: | Thy1-THY010033A06 |
| Conread position: | 311-936 |
| Cow position: | chr18:22065403-22064812 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 10 |
| Conread position: | 314-550 |
| Cow position: | chr18:21291063-21290822 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 314-936 |
| Cow position: | chr18:28085516-28086146 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 209 |
| Conread position: | 319-556 |
| Cow position: | chr18:30438687-30438923 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 13, 137 |
| Conread position: | 319-591 |
| Cow position: | chr18:31393540-31393804 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 194 |
| Conread position: | 319-673 |
| Cow position: | chr18:8170138-8170488 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 26 |
| Conread position: | 319-872 |
| Cow position: | chr18:29224641-29225183 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 189 |
| Conread position: | 320-541 |
| Cow position: | chr18:1062057-1061843 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 98, 135 |
| Conread position: | 320-564 |
| Cow position: | chr18:23669319-23669065 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 189 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 321-478 |
| Cow position: | chr18:23317159-23316998 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 321-534 |
| Cow position: | chr18:54031654-54031869 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 97, 52 |
| Conread position: | 322-932 |
| Cow position: | chr18:39475303-39474702 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 64 |
| Conread position: | 336-932 |
| Cow position: | chr18:32860623-32861215 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 110 |
| Conread position: | 336-933 |
| Cow position: | chr18:25847040-25846470 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 85 |
| Conread position: | 340-505 |
| Cow position: | chr18:16258829-16258996 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 341-545 |
| Cow position: | chr18:11367782-11367577 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 77, 16 |
| Conread position: | 356-684 |
| Cow position: | chr18:48549973-48550299 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 104 |
| Conread position: | 372-637 |
| Cow position: | chr18:8204529-8204797 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 23, 115 |
| Conread position: | 380-556 |
| Cow position: | chr18:2024877-2024700 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 38, 72 |
| Conread position: | 397-929 |
| Cow position: | chr18:27404929-27405446 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 63 |
| Conread position: | 420-786 |
| Cow position: | chr18:35471749-35471393 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 125 |
| Conread position: | 438-931 |
| Cow position: | chr18:1700664-1701146 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 91 |
| Conread position: | 452-931 |
| Cow position: | chr18:22433703-22433224 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 70 |
| Conread position: | 453-692 |
| Cow position: | chr18:23504515-23504272 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 138, 91 |
| Conread position: | 456-891 |
| Cow position: | chr18:53028792-53029228 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 201 |
| Conread position: | 467-842 |
| Cow position: | chr18:23316671-23316298 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 59 |
| Conread position: | 487-746 |
| Cow position: | chr18:21290667-21290400 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 72, 160 |
| Conread position: | 500-933 |
| Cow position: | chr18:16259394-16259831 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 67 |
| Conread position: | 536-913 |
| Cow position: | chr18:39740122-39740499 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 56, 14 |
| Conread position: | 565-772 |
| Cow position: | chr18:16539101-16539312 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 29, 78 |
| Conread position: | 570-739 |
| Cow position: | chr18:26667346-26667506 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 596-802 |
| Cow position: | chr18:33896064-33896269 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 9, 60 |
| Conread position: | 597-929 |
| Cow position: | chr18:29081239-29081573 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 8, 41 |
| Conread position: | 601-930 |
| Cow position: | chr18:24664210-24663885 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 231 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 171, 49 |
| Conread position: | 601-933 |
| Cow position: | chr18:53047826-53047492 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 54 |
| Conread position: | 660-922 |
| Cow position: | chr18:29043156-29042905 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 170, 44 |
| Conread position: | 661-934 |
| Cow position: | chr18:21123234-21122964 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 61, 43 |
| Conread position: | 679-934 |
| Cow position: | chr18:18975798-18976037 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 22, 57 |
| Conread position: | 688-933 |
| Cow position: | chr18:49436666-49436917 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 91, 16 |
| Conread position: | 711-935 |
| Cow position: | chr18:1129238-1129461 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 65, 24 |
| Conread position: | 715-935 |
| Cow position: | chr18:32371769-32371556 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 115, 9 |
| Conread position: | 728-936 |
| Cow position: | chr18:52870963-52871177 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 43, 80 |
| Conread position: | 737-927 |
| Cow position: | chr18:36456400-36456598 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 38, 84 |
| Conread position: | 737-932 |
| Cow position: | chr18:23503453-23503278 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 776-924 |
| Cow position: | chr18:12078691-12078545 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 54, 30 |
| Conread position: | 776-931 |
| Cow position: | chr18:19213451-19213299 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 53, 35 |
| Conread position: | 779-935 |
| Cow position: | chr18:1740707-1740553 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 792-919 |
| Cow position: | chr18:35471136-35471011 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 36, 15 |
| Conread position: | 793-936 |
| Cow position: | chr18:32286651-32286789 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 35, 18 |
Show alignments to all cow chromosomes.