Cow genome map
| Conread name: | Thy1-THY010033A06 |
| Conread position: | 278-767 |
| Cow position: | chr20:35249604-35249116 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 7 |
| Conread position: | 309-479 |
| Cow position: | chr20:19238412-19238244 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 109, 5 |
| Conread position: | 311-931 |
| Cow position: | chr20:31563958-31563338 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 213 |
| Conread position: | 312-543 |
| Cow position: | chr20:35897537-35897762 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 6, 177 |
| Conread position: | 314-708 |
| Cow position: | chr20:2858361-2858728 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 9, 122 |
| Conread position: | 319-501 |
| Cow position: | chr20:27843676-27843858 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 100, 42 |
| Conread position: | 319-538 |
| Cow position: | chr20:17831851-17832071 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 99, 47 |
| Conread position: | 319-591 |
| Cow position: | chr20:20350967-20350699 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 221 |
| Conread position: | 319-624 |
| Cow position: | chr20:35384776-35385066 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 259, 8 |
| Conread position: | 319-640 |
| Cow position: | chr20:23422370-23422051 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 237 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 104, 51 |
| Conread position: | 319-783 |
| Cow position: | chr20:4851183-4851654 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 49 |
| Conread position: | 320-570 |
| Cow position: | chr20:7539198-7538944 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 98, 229 |
| Conread position: | 320-932 |
| Cow position: | chr20:22920143-22919517 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 125 |
| Conread position: | 321-574 |
| Cow position: | chr20:13821553-13821296 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 97, 74 |
| Conread position: | 321-725 |
| Cow position: | chr20:17474759-17474344 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 254 |
| Conread position: | 322-829 |
| Cow position: | chr20:25293622-25294132 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 200 |
| Conread position: | 323-694 |
| Cow position: | chr20:16585603-16585229 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 74 |
| Conread position: | 325-862 |
| Cow position: | chr20:24279999-24280533 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 153 |
| Conread position: | 336-518 |
| Cow position: | chr20:18828977-18829151 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 336-565 |
| Cow position: | chr20:32153551-32153780 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 81, 110 |
| Conread position: | 337-775 |
| Cow position: | chr20:27977662-27977227 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 65 |
| Conread position: | 338-518 |
| Cow position: | chr20:4615760-4615577 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 80, 102 |
| Conread position: | 353-583 |
| Cow position: | chr20:22716634-22716396 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 20, 92 |
| Conread position: | 367-932 |
| Cow position: | chr20:13589086-13588512 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 49 |
| Conread position: | 369-550 |
| Cow position: | chr20:21402978-21403162 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 376-936 |
| Cow position: | chr20:14864790-14864223 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 81 |
| Conread position: | 401-930 |
| Cow position: | chr20:15147880-15147354 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 153 |
| Conread position: | 429-614 |
| Cow position: | chr20:35890178-35889991 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 43, 60 |
| Conread position: | 443-575 |
| Cow position: | chr20:28800611-28800479 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 443-786 |
| Cow position: | chr20:36707305-36706972 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 237 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 157, 13 |
| Conread position: | 454-713 |
| Cow position: | chr20:12119453-12119190 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 199 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 115, 47 |
| Conread position: | 457-751 |
| Cow position: | chr20:25991923-25991619 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 88, 241 |
| Conread position: | 458-931 |
| Cow position: | chr20:22420635-22420161 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 33 |
| Conread position: | 480-746 |
| Cow position: | chr20:26992958-26993224 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 203 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 11, 66 |
| Conread position: | 487-903 |
| Cow position: | chr20:13023323-13022923 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 137, 56 |
| Conread position: | 497-877 |
| Cow position: | chr20:27844218-27844617 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 73 |
| Conread position: | 539-892 |
| Cow position: | chr20:13790231-13790599 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 21, 126 |
| Conread position: | 546-915 |
| Cow position: | chr20:4874933-4874559 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 246 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 36, 29 |
| Conread position: | 570-843 |
| Cow position: | chr20:9918736-9919027 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 23, 50 |
| Conread position: | 595-936 |
| Cow position: | chr20:21002241-21001906 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 253 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 54, 68 |
| Conread position: | 597-935 |
| Cow position: | chr20:33154673-33154335 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 248 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 68, 58 |
| Conread position: | 602-919 |
| Cow position: | chr20:3377003-3376676 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 244 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 7, 58 |
| Conread position: | 604-936 |
| Cow position: | chr20:5668476-5668130 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 54 |
| Conread position: | 606-936 |
| Cow position: | chr20:21847588-21847260 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 172, 50 |
| Conread position: | 624-911 |
| Cow position: | chr20:31098042-31098329 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 144, 17 |
| Conread position: | 626-934 |
| Cow position: | chr20:20350454-20350150 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 152, 29 |
| Conread position: | 627-930 |
| Cow position: | chr20:21415329-21415025 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 224, 28 |
| Conread position: | 627-931 |
| Cow position: | chr20:3157799-3158096 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 201, 23 |
| Conread position: | 648-933 |
| Cow position: | chr20:23422007-23421721 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 213 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 9, 60 |
| Conread position: | 655-804 |
| Cow position: | chr20:28617743-28617591 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 124, 49 |
| Conread position: | 655-930 |
| Cow position: | chr20:30285727-30286003 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 115, 49 |
| Conread position: | 661-928 |
| Cow position: | chr20:13252999-13252746 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 172, 43 |
| Conread position: | 683-934 |
| Cow position: | chr20:23400673-23400918 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 104, 21 |
| Conread position: | 686-932 |
| Cow position: | chr20:36988202-36987951 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 93, 18 |
| Conread position: | 687-936 |
| Cow position: | chr20:7801734-7801488 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 192 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 691-922 |
| Cow position: | chr20:2858742-2858971 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 118, 8 |
| Conread position: | 704-899 |
| Cow position: | chr20:20072141-20071937 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 67, 171 |
| Conread position: | 728-929 |
| Cow position: | chr20:21301035-21300828 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 50, 134 |
| Conread position: | 737-923 |
| Cow position: | chr20:17473152-17472959 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 774-934 |
| Cow position: | chr20:16582799-16582643 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 54, 36 |
| Conread position: | 784-931 |
| Cow position: | chr20:4851791-4851935 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 43, 27 |
| Conread position: | 786-936 |
| Cow position: | chr20:15492284-15492432 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 43, 25 |
| Conread position: | 793-930 |
| Cow position: | chr20:9071390-9071254 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
Show alignments to all cow chromosomes.