Cow genome map
| Conread name: | Thy1-THY010033A06 |
| Conread position: | 309-611 |
| Cow position: | chr21:24944862-24944553 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 290 |
| Conread position: | 314-498 |
| Cow position: | chr21:37941645-37941457 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 85, 23 |
| Conread position: | 314-633 |
| Cow position: | chr21:41041452-41041763 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 230 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 261, 120 |
| Conread position: | 319-478 |
| Cow position: | chr21:37282346-37282507 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 102, 54 |
| Conread position: | 319-484 |
| Cow position: | chr21:39075662-39075496 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 98, 13 |
| Conread position: | 319-652 |
| Cow position: | chr21:33974539-33974874 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 110, 20 |
| Conread position: | 319-684 |
| Cow position: | chr21:6280337-6280703 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 25 |
| Conread position: | 319-701 |
| Cow position: | chr21:39765889-39766262 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 281 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 107, 34 |
| Conread position: | 319-804 |
| Cow position: | chr21:25018911-25019397 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 21 |
| Conread position: | 319-923 |
| Cow position: | chr21:24972561-24971976 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 81 |
| Conread position: | 320-543 |
| Cow position: | chr21:9040913-9041139 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 98, 73 |
| Conread position: | 320-543 |
| Cow position: | chr21:48282780-48283009 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 320-571 |
| Cow position: | chr21:33292760-33293018 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 320-786 |
| Cow position: | chr21:5597197-5597653 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 331 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 69, 77 |
| Conread position: | 320-838 |
| Cow position: | chr21:37355722-37356226 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 136 |
| Conread position: | 320-919 |
| Cow position: | chr21:16166595-16166004 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 26 |
| Conread position: | 324-523 |
| Cow position: | chr21:12077400-12077610 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 96, 20 |
| Conread position: | 331-935 |
| Cow position: | chr21:45447644-45448246 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 193 |
| Conread position: | 336-543 |
| Cow position: | chr21:30897477-30897683 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 92, 44 |
| Conread position: | 336-925 |
| Cow position: | chr21:1991348-1991931 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 34 |
| Conread position: | 341-923 |
| Cow position: | chr21:23399020-23399611 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 187 |
| Conread position: | 346-534 |
| Cow position: | chr21:31597227-31597419 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 71, 140 |
| Conread position: | 351-934 |
| Cow position: | chr21:15543875-15543291 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 98 |
| Conread position: | 361-933 |
| Cow position: | chr21:26632357-26631801 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 12 |
| Conread position: | 413-849 |
| Cow position: | chr21:16678949-16679363 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 164 |
| Conread position: | 424-740 |
| Cow position: | chr21:8273398-8273075 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 235 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 132, 27 |
| Conread position: | 467-777 |
| Cow position: | chr21:7724754-7724469 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 21, 79 |
| Conread position: | 494-936 |
| Cow position: | chr21:39075270-39074819 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 168 |
| Conread position: | 498-786 |
| Cow position: | chr21:37941272-37940997 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 138, 95 |
| Conread position: | 524-932 |
| Cow position: | chr21:22941631-22942035 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 49 |
| Conread position: | 529-936 |
| Cow position: | chr21:29943161-29943569 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 284 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 63, 37 |
| Conread position: | 544-750 |
| Cow position: | chr21:27089855-27089646 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 16, 10 |
| Conread position: | 545-820 |
| Cow position: | chr21:3614304-3614578 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 30, 77 |
| Conread position: | 545-925 |
| Cow position: | chr21:41458483-41458110 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 60, 47 |
| Conread position: | 548-933 |
| Cow position: | chr21:26742233-26741864 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 275 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 52, 100 |
| Conread position: | 557-931 |
| Cow position: | chr21:6667475-6667849 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 270 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 29, 106 |
| Conread position: | 565-913 |
| Cow position: | chr21:4775141-4775482 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 42, 52 |
| Conread position: | 574-781 |
| Cow position: | chr21:30793973-30793762 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 19, 48 |
| Conread position: | 596-936 |
| Cow position: | chr21:23286323-23285982 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 248 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 11, 63 |
| Conread position: | 601-921 |
| Cow position: | chr21:5878913-5878604 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 227, 18 |
| Conread position: | 602-936 |
| Cow position: | chr21:41728856-41728521 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 6, 42 |
| Conread position: | 655-936 |
| Cow position: | chr21:38021277-38021556 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 140, 22 |
| Conread position: | 657-935 |
| Cow position: | chr21:17671998-17671721 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 120, 26 |
| Conread position: | 661-933 |
| Cow position: | chr21:12079601-12079873 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 86, 22 |
| Conread position: | 668-934 |
| Cow position: | chr21:37282915-37283175 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 110, 15 |
| Conread position: | 688-934 |
| Cow position: | chr21:42396394-42396644 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 107, 16 |
| Conread position: | 697-934 |
| Cow position: | chr21:30567545-30567309 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 135, 40 |
| Conread position: | 698-929 |
| Cow position: | chr21:5486974-5487191 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 130, 50 |
| Conread position: | 720-933 |
| Cow position: | chr21:6282369-6282581 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 61, 96 |
| Conread position: | 779-932 |
| Cow position: | chr21:27678523-27678674 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 50, 32 |
| Conread position: | 785-934 |
| Cow position: | chr21:39527400-39527545 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 42, 26 |
| Conread position: | 790-934 |
| Cow position: | chr21:25019518-25019660 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 37, 16 |
| Conread position: | 813-934 |
| Cow position: | chr21:28650886-28651005 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 15, 63 |
| Conread position: | 826-936 |
| Cow position: | chr21:40441865-40441755 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 88 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 830-936 |
| Cow position: | chr21:30772791-30772684 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 95, 0 |
Show alignments to all cow chromosomes.