Cow genome map
| Conread name: | Thy1-THY010033A06 |
| Conread position: | 304-919 |
| Cow position: | chr24:17763323-17762704 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 10 |
| Conread position: | 309-786 |
| Cow position: | chr24:19961563-19961093 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 37 |
| Conread position: | 310-495 |
| Cow position: | chr24:15473899-15474081 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 15, 64 |
| Conread position: | 311-930 |
| Cow position: | chr24:14913597-14913005 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 8 |
| Conread position: | 314-904 |
| Cow position: | chr24:25245988-25246580 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 143 |
| Conread position: | 314-936 |
| Cow position: | chr24:6177345-6177980 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 218 |
| Conread position: | 316-665 |
| Cow position: | chr24:19627283-19627636 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 255 |
| Conread position: | 319-591 |
| Cow position: | chr24:36853279-36853555 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 144 |
| Conread position: | 319-701 |
| Cow position: | chr24:7038719-7039101 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 279 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 48, 83 |
| Conread position: | 319-786 |
| Cow position: | chr24:38643587-38644048 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 65 |
| Conread position: | 319-917 |
| Cow position: | chr24:37386389-37385809 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 76 |
| Conread position: | 319-931 |
| Cow position: | chr24:43351141-43350517 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 231 |
| Conread position: | 320-543 |
| Cow position: | chr24:39607616-39607397 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 320-560 |
| Cow position: | chr24:26846299-26846057 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 12, 18 |
| Conread position: | 320-933 |
| Cow position: | chr24:42817217-42817840 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 236 |
| Conread position: | 321-498 |
| Cow position: | chr24:40040886-40040714 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 102, 119 |
| Conread position: | 321-504 |
| Cow position: | chr24:35836288-35836098 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 13, 54 |
| Conread position: | 321-560 |
| Cow position: | chr24:28440550-28440793 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 105, 228 |
| Conread position: | 335-561 |
| Cow position: | chr24:38001766-38001552 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 109, 60 |
| Conread position: | 335-679 |
| Cow position: | chr24:43492531-43492195 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 119 |
| Conread position: | 336-543 |
| Cow position: | chr24:9786460-9786676 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 45, 6 |
| Conread position: | 339-552 |
| Cow position: | chr24:4607189-4606974 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 79, 112 |
| Conread position: | 339-560 |
| Cow position: | chr24:6665466-6665240 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 340-540 |
| Cow position: | chr24:19644647-19644851 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 67, 123 |
| Conread position: | 340-543 |
| Cow position: | chr24:16476697-16476900 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 346-935 |
| Cow position: | chr24:41405330-41404755 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 94 |
| Conread position: | 366-741 |
| Cow position: | chr24:25343064-25343439 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 274 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 43, 105 |
| Conread position: | 401-933 |
| Cow position: | chr24:6424015-6423498 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 55 |
| Conread position: | 415-933 |
| Cow position: | chr24:31301601-31301102 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 5 |
| Conread position: | 456-681 |
| Cow position: | chr24:25934503-25934724 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 149, 99 |
| Conread position: | 462-723 |
| Cow position: | chr24:36551252-36550996 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 130, 57 |
| Conread position: | 464-889 |
| Cow position: | chr24:9867370-9866937 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 312 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 105, 70 |
| Conread position: | 467-935 |
| Cow position: | chr24:35835909-35835458 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 330 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 127, 48 |
| Conread position: | 491-936 |
| Cow position: | chr24:32579312-32579753 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 76 |
| Conread position: | 493-786 |
| Cow position: | chr24:15474827-15475111 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 5, 53 |
| Conread position: | 499-933 |
| Cow position: | chr24:17417219-17417663 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 317 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 94, 67 |
| Conread position: | 522-902 |
| Cow position: | chr24:31845656-31845272 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 256 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 74, 19 |
| Conread position: | 532-928 |
| Cow position: | chr24:30899654-30899251 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 284 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 82, 9 |
| Conread position: | 570-786 |
| Cow position: | chr24:22839402-22839182 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 30, 135 |
| Conread position: | 574-913 |
| Cow position: | chr24:16190355-16190678 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 46, 20 |
| Conread position: | 585-870 |
| Cow position: | chr24:36853584-36853863 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 15, 28 |
| Conread position: | 597-935 |
| Cow position: | chr24:36097703-36098048 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 17, 59 |
| Conread position: | 631-936 |
| Cow position: | chr24:1295988-1295684 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 25 |
| Conread position: | 639-919 |
| Cow position: | chr24:31393832-31393560 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 22, 82 |
| Conread position: | 639-932 |
| Cow position: | chr24:33274132-33274428 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 148, 36 |
| Conread position: | 653-933 |
| Cow position: | chr24:19627712-19628008 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 217 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 121, 9 |
| Conread position: | 655-804 |
| Cow position: | chr24:36098885-36098733 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 100, 45 |
| Conread position: | 688-936 |
| Cow position: | chr24:43491381-43491128 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 16, 36 |
| Conread position: | 703-924 |
| Cow position: | chr24:23253637-23253409 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 73, 81 |
| Conread position: | 720-934 |
| Cow position: | chr24:42338740-42338960 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 721-936 |
| Cow position: | chr24:44484037-44483821 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 44, 32 |
| Conread position: | 783-932 |
| Cow position: | chr24:36550637-36550494 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 790-935 |
| Cow position: | chr24:39384512-39384369 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 38, 21 |
| Conread position: | 822-935 |
| Cow position: | chr24:15476625-15476738 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.