Cow genome map
| Conread name: | Thy1-THY010033A06 |
| Conread position: | 308-871 |
| Cow position: | chr27:11935669-11935110 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 9 |
| Conread position: | 314-536 |
| Cow position: | chr27:5530732-5530506 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 173 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 106, 156 |
| Conread position: | 314-929 |
| Cow position: | chr27:9261812-9261178 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 67 |
| Conread position: | 319-932 |
| Cow position: | chr27:3934709-3935351 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 94 |
| Conread position: | 319-934 |
| Cow position: | chr27:30888922-30889532 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 54 |
| Conread position: | 320-496 |
| Cow position: | chr27:11671987-11671809 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 86, 123 |
| Conread position: | 320-534 |
| Cow position: | chr27:30573269-30573486 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 97, 183 |
| Conread position: | 320-542 |
| Cow position: | chr27:1142063-1142287 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 17, 13 |
| Conread position: | 320-931 |
| Cow position: | chr27:31237981-31238624 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 416 |
| Conread position: | 321-504 |
| Cow position: | chr27:25676201-25676016 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 98, 12 |
| Conread position: | 321-560 |
| Cow position: | chr27:4007283-4007526 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 321-560 |
| Cow position: | chr27:27737955-27738198 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 97, 9 |
| Conread position: | 336-560 |
| Cow position: | chr27:26033348-26033122 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 8, 13 |
| Conread position: | 337-538 |
| Cow position: | chr27:4234315-4234520 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 81, 110 |
| Conread position: | 341-516 |
| Cow position: | chr27:9184580-9184395 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 31, 156 |
| Conread position: | 402-933 |
| Cow position: | chr27:26091509-26092053 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 120 |
| Conread position: | 419-637 |
| Cow position: | chr27:30738373-30738585 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 191, 125 |
| Conread position: | 430-556 |
| Cow position: | chr27:28105297-28105423 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 513-934 |
| Cow position: | chr27:12879460-12879878 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 283 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 27, 57 |
| Conread position: | 536-807 |
| Cow position: | chr27:11755715-11755986 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 58, 96 |
| Conread position: | 545-924 |
| Cow position: | chr27:11955932-11956323 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 156, 50 |
| Conread position: | 545-935 |
| Cow position: | chr27:4962394-4962772 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 260 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 135, 8 |
| Conread position: | 547-933 |
| Cow position: | chr27:17564783-17564389 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 271 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 92, 15 |
| Conread position: | 568-928 |
| Cow position: | chr27:29611283-29610928 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 10, 75 |
| Conread position: | 570-934 |
| Cow position: | chr27:13860864-13861214 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 23, 140 |
| Conread position: | 571-933 |
| Cow position: | chr27:2246722-2246360 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 82 |
| Conread position: | 586-932 |
| Cow position: | chr27:18693987-18694330 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 8, 74 |
| Conread position: | 596-807 |
| Cow position: | chr27:6534361-6534576 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 11, 60 |
| Conread position: | 602-936 |
| Cow position: | chr27:18589432-18589101 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 247 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 55, 17 |
| Conread position: | 603-931 |
| Cow position: | chr27:18057196-18056862 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 232 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 13, 54 |
| Conread position: | 629-936 |
| Cow position: | chr27:1540615-1540900 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 108, 26 |
| Conread position: | 639-934 |
| Cow position: | chr27:11021419-11021125 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 222 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 19, 67 |
| Conread position: | 655-905 |
| Cow position: | chr27:15211403-15211140 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 84, 49 |
| Conread position: | 667-936 |
| Cow position: | chr27:7860135-7860410 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 109, 19 |
| Conread position: | 696-913 |
| Cow position: | chr27:28292971-28292754 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 84, 8 |
| Conread position: | 702-920 |
| Cow position: | chr27:5531302-5531514 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 9, 35 |
| Conread position: | 704-932 |
| Cow position: | chr27:18179082-18179317 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 80, 131 |
| Conread position: | 709-934 |
| Cow position: | chr27:4921868-4922099 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 69, 27 |
| Conread position: | 721-936 |
| Cow position: | chr27:18546492-18546282 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 172 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 62, 32 |
| Conread position: | 750-935 |
| Cow position: | chr27:7183772-7183954 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 78, 6 |
| Conread position: | 754-930 |
| Cow position: | chr27:12000122-12000307 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 810-934 |
| Cow position: | chr27:18780198-18780073 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 17, 12 |
Show alignments to all cow chromosomes.