Cow genome map
| Conread name: | Thy1-THY010033A06 |
| Conread position: | 319-493 |
| Cow position: | chr28:26627159-26626979 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 319-670 |
| Cow position: | chr28:7607221-7607572 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 255 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 104, 63 |
| Conread position: | 319-681 |
| Cow position: | chr28:22829910-22830276 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 153 |
| Conread position: | 320-548 |
| Cow position: | chr28:16466609-16466835 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 103, 118 |
| Conread position: | 320-560 |
| Cow position: | chr28:19961853-19962092 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 17, 10 |
| Conread position: | 321-473 |
| Cow position: | chr28:11380054-11379896 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 321-523 |
| Cow position: | chr28:13936385-13936599 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 321-543 |
| Cow position: | chr28:20265388-20265615 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 321-551 |
| Cow position: | chr28:3068910-3069147 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 97, 11 |
| Conread position: | 321-592 |
| Cow position: | chr28:6277560-6277290 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 52 |
| Conread position: | 321-935 |
| Cow position: | chr28:2340524-2341143 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 82 |
| Conread position: | 335-936 |
| Cow position: | chr28:34347249-34346649 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 116 |
| Conread position: | 336-613 |
| Cow position: | chr28:15915248-15914972 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 119 |
| Conread position: | 337-548 |
| Cow position: | chr28:30370792-30371006 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 81, 63 |
| Conread position: | 337-936 |
| Cow position: | chr28:28630576-28631169 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 235 |
| Conread position: | 338-931 |
| Cow position: | chr28:22613924-22614496 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 50 |
| Conread position: | 340-543 |
| Cow position: | chr28:34636673-34636876 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 61, 39 |
| Conread position: | 342-775 |
| Cow position: | chr28:22855303-22855712 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 310 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 79, 31 |
| Conread position: | 345-591 |
| Cow position: | chr28:21940198-21940447 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 200, 27 |
| Conread position: | 362-932 |
| Cow position: | chr28:22360663-22361229 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 196 |
| Conread position: | 406-806 |
| Cow position: | chr28:23390408-23390818 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 66 |
| Conread position: | 421-929 |
| Cow position: | chr28:34117180-34117692 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 75 |
| Conread position: | 452-798 |
| Cow position: | chr28:16805358-16805004 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 247 |
| Conread position: | 473-930 |
| Cow position: | chr28:15349604-15350053 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 71 |
| Conread position: | 483-935 |
| Cow position: | chr28:26627016-26626585 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 6 |
| Conread position: | 502-875 |
| Cow position: | chr28:24468204-24468593 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 269 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 58, 199 |
| Conread position: | 537-929 |
| Cow position: | chr28:7799991-7799600 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 293 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 32, 59 |
| Conread position: | 547-892 |
| Cow position: | chr28:6355284-6355634 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 52, 111 |
| Conread position: | 576-936 |
| Cow position: | chr28:5912600-5912235 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 82 |
| Conread position: | 580-913 |
| Cow position: | chr28:3803109-3803424 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 53, 22 |
| Conread position: | 595-923 |
| Cow position: | chr28:13179440-13179759 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 138, 19 |
| Conread position: | 596-921 |
| Cow position: | chr28:11690255-11689952 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 231, 48 |
| Conread position: | 597-936 |
| Cow position: | chr28:31994385-31994026 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 22 |
| Conread position: | 614-928 |
| Cow position: | chr28:10647807-10647490 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 170, 41 |
| Conread position: | 636-919 |
| Cow position: | chr28:22202128-22202404 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 22, 60 |
| Conread position: | 639-835 |
| Cow position: | chr28:17482636-17482448 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 139, 42 |
| Conread position: | 661-931 |
| Cow position: | chr28:4803139-4802868 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 116, 43 |
| Conread position: | 670-931 |
| Cow position: | chr28:8172908-8172661 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 119, 34 |
| Conread position: | 670-936 |
| Cow position: | chr28:20095211-20095493 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 111, 34 |
| Conread position: | 703-934 |
| Cow position: | chr28:2642001-2642223 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 125, 65 |
| Conread position: | 704-932 |
| Cow position: | chr28:16251887-16251657 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 50, 33 |
| Conread position: | 706-930 |
| Cow position: | chr28:7592569-7592790 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 7, 79 |
| Conread position: | 713-935 |
| Cow position: | chr28:6103091-6103317 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 63, 20 |
| Conread position: | 724-934 |
| Cow position: | chr28:25926709-25926926 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 49, 96 |
| Conread position: | 788-935 |
| Cow position: | chr28:11284071-11283926 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 40, 24 |
| Conread position: | 788-936 |
| Cow position: | chr28:27890324-27890177 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 39, 23 |
| Conread position: | 795-935 |
| Cow position: | chr28:16241230-16241092 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 33, 16 |
| Conread position: | 798-932 |
| Cow position: | chr28:22339895-22340029 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 17, 32 |
| Conread position: | 813-936 |
| Cow position: | chr28:22831066-22831190 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 814-934 |
| Cow position: | chr28:34338240-34338361 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 814-936 |
| Cow position: | chr28:16804786-16804663 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
Show alignments to all cow chromosomes.