Cow genome map
| Conread name: | Thy1-THY010033A06 |
| Conread position: | 302-935 |
| Cow position: | chr29:21198687-21198027 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 267 |
| Conread position: | 307-538 |
| Cow position: | chr29:17965930-17966164 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 109, 162 |
| Conread position: | 314-559 |
| Cow position: | chr29:18880440-18880198 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 104, 65 |
| Conread position: | 319-537 |
| Cow position: | chr29:32809418-32809638 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 99, 72 |
| Conread position: | 319-543 |
| Cow position: | chr29:13653214-13653428 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 319-588 |
| Cow position: | chr29:30921702-30921433 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 76 |
| Conread position: | 319-757 |
| Cow position: | chr29:37207742-37208183 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 228 |
| Conread position: | 319-929 |
| Cow position: | chr29:8906509-8907117 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 190 |
| Conread position: | 319-931 |
| Cow position: | chr29:2481359-2480755 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 24 |
| Conread position: | 319-935 |
| Cow position: | chr29:18338562-18337950 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 87 |
| Conread position: | 319-936 |
| Cow position: | chr29:16359599-16360220 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 233 |
| Conread position: | 320-538 |
| Cow position: | chr29:17339322-17339104 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 97, 50 |
| Conread position: | 320-560 |
| Cow position: | chr29:798417-798170 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 78, 50 |
| Conread position: | 320-823 |
| Cow position: | chr29:13040553-13040060 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 104 |
| Conread position: | 320-889 |
| Cow position: | chr29:19931315-19931886 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 68 |
| Conread position: | 321-560 |
| Cow position: | chr29:134157-134397 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 97, 61 |
| Conread position: | 321-932 |
| Cow position: | chr29:35036716-35037327 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 95 |
| Conread position: | 333-543 |
| Cow position: | chr29:14034333-14034124 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 80, 96 |
| Conread position: | 333-556 |
| Cow position: | chr29:14032246-14032021 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 84, 96 |
| Conread position: | 336-543 |
| Cow position: | chr29:22953583-22953380 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 35, 65 |
| Conread position: | 336-556 |
| Cow position: | chr29:9512871-9513081 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 82, 104 |
| Conread position: | 339-702 |
| Cow position: | chr29:28115092-28115454 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 43 |
| Conread position: | 345-861 |
| Cow position: | chr29:22454817-22454303 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 28 |
| Conread position: | 411-931 |
| Cow position: | chr29:7738621-7738098 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 76 |
| Conread position: | 443-758 |
| Cow position: | chr29:30813548-30813859 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 116 |
| Conread position: | 447-688 |
| Cow position: | chr29:8685124-8685384 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 94, 16 |
| Conread position: | 466-874 |
| Cow position: | chr29:4458723-4459135 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 287 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 139, 9 |
| Conread position: | 500-935 |
| Cow position: | chr29:3346129-3346558 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 304 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 29, 69 |
| Conread position: | 545-905 |
| Cow position: | chr29:27123464-27123115 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 30, 77 |
| Conread position: | 546-935 |
| Cow position: | chr29:23988693-23989098 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 280 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 32, 109 |
| Conread position: | 547-904 |
| Cow position: | chr29:13608741-13608394 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 327, 45 |
| Conread position: | 572-868 |
| Cow position: | chr29:7959591-7959296 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 21, 85 |
| Conread position: | 596-840 |
| Cow position: | chr29:2848159-2847912 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 62, 47 |
| Conread position: | 599-780 |
| Cow position: | chr29:30921138-30920956 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 102, 56 |
| Conread position: | 599-933 |
| Cow position: | chr29:23823223-23822908 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 15, 57 |
| Conread position: | 670-936 |
| Cow position: | chr29:7892632-7892359 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 41, 34 |
| Conread position: | 696-934 |
| Cow position: | chr29:682174-681943 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 98, 8 |
| Conread position: | 703-930 |
| Cow position: | chr29:34392163-34392401 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 94, 34 |
| Conread position: | 715-936 |
| Cow position: | chr29:1711418-1711640 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 70, 22 |
| Conread position: | 720-933 |
| Cow position: | chr29:18361305-18361093 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 35, 19 |
| Conread position: | 734-936 |
| Cow position: | chr29:30814075-30814281 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 64, 158 |
| Conread position: | 737-929 |
| Cow position: | chr29:19252664-19252861 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 28, 76 |
| Conread position: | 737-934 |
| Cow position: | chr29:31046923-31046732 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 92, 54 |
| Conread position: | 765-932 |
| Cow position: | chr29:38386844-38387010 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 13, 54 |
| Conread position: | 789-936 |
| Cow position: | chr29:849538-849683 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 38, 22 |
| Conread position: | 817-936 |
| Cow position: | chr29:42269674-42269794 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
Show alignments to all cow chromosomes.