Cow genome map

Conread name: Thy1-THY010033A06

Conread position: 2-307
Cow position: chr4:29222984-29222697 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 13

Conread position: 289-550
Cow position: chr4:20926039-20925777 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 192
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 23, 58

Conread position: 292-501
Cow position: chr4:57566543-57566330 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 155
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 13, 27

Conread position: 302-700
Cow position: chr4:29222568-29222164 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 253

Conread position: 312-669
Cow position: chr4:32749165-32749540 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 326

Conread position: 314-543
Cow position: chr4:52597510-52597266 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 169
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 84, 0

Conread position: 314-936
Cow position: chr4:5189044-5188418 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 48

Conread position: 314-936
Cow position: chr4:49741514-49742149 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 65

Conread position: 319-479
Cow position: chr4:21162642-21162797 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 100, 71

Conread position: 319-503
Cow position: chr4:5623228-5623042 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 144
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 101, 140

Conread position: 319-550
Cow position: chr4:6630318-6630088 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 177
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 102, 54

Conread position: 319-670
Cow position: chr4:8597720-8597363 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 240

Conread position: 319-681
Cow position: chr4:31586853-31586488 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 81

Conread position: 319-726
Cow position: chr4:4300508-4300915 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 288
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 7, 41

Conread position: 319-776
Cow position: chr4:34043654-34043194 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 66

Conread position: 319-905
Cow position: chr4:47510994-47511589 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 254

Conread position: 319-932
Cow position: chr4:9822120-9822733 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 120

Conread position: 319-932
Cow position: chr4:41975744-41975136 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 230

Conread position: 319-936
Cow position: chr4:39646646-39647245 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 36

Conread position: 320-528
Cow position: chr4:29951577-29951367 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 148
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 98, 141

Conread position: 320-543
Cow position: chr4:9649978-9650206 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 157
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 97, 56

Conread position: 320-543
Cow position: chr4:61171882-61172101 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 161
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 84, 11

Conread position: 320-551
Cow position: chr4:57652213-57652449 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 0

Conread position: 320-714
Cow position: chr4:17176122-17176510 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 229

Conread position: 321-574
Cow position: chr4:45114630-45114378 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 189
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 100, 67

Conread position: 322-475
Cow position: chr4:58433243-58433086 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 125
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 97, 154

Conread position: 330-919
Cow position: chr4:29067660-29067080 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 21

Conread position: 334-552
Cow position: chr4:61191455-61191678 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 150
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 82, 0

Conread position: 336-539
Cow position: chr4:53763135-53762930 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 161
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 81, 153

Conread position: 336-551
Cow position: chr4:3133248-3133462 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 155
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 80, 162

Conread position: 336-709
Cow position: chr4:58833228-58832854 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 43

Conread position: 340-541
Cow position: chr4:41895643-41895849 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 139
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 78, 0

Conread position: 356-565
Cow position: chr4:5777044-5776836 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 157
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 59, 115

Conread position: 360-537
Cow position: chr4:58856740-58856560 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 137
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 60, 20

Conread position: 368-556
Cow position: chr4:31349605-31349416 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 138
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 50, 92

Conread position: 369-782
Cow position: chr4:59565556-59565981 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 9

Conread position: 382-512
Cow position: chr4:49884964-49884830 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 39, 9

Conread position: 382-934
Cow position: chr4:53641356-53641900 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 173

Conread position: 387-713
Cow position: chr4:27443870-27444206 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 280

Conread position: 402-793
Cow position: chr4:6793419-6793802 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 25

Conread position: 412-551
Cow position: chr4:68107432-68107296 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 105
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 35, 0

Conread position: 424-936
Cow position: chr4:57222145-57221626 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 127

Conread position: 429-664
Cow position: chr4:60159626-60159387 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 180
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 62, 41

Conread position: 438-896
Cow position: chr4:46875429-46874957 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 233

Conread position: 443-720
Cow position: chr4:51905264-51905532 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 204
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 123, 0

Conread position: 482-934
Cow position: chr4:60640071-60639626 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 114

Conread position: 489-936
Cow position: chr4:58432822-58432375 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 18

Conread position: 491-934
Cow position: chr4:60662547-60662983 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 72

Conread position: 496-933
Cow position: chr4:57566061-57565635 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 70

Conread position: 497-910
Cow position: chr4:2238089-2237693 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 278
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 54, 107

Conread position: 500-889
Cow position: chr4:21162792-21163193 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 161

Conread position: 527-878
Cow position: chr4:58856341-58855977 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 251
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 43, 138

Conread position: 540-786
Cow position: chr4:24713460-24713220 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 181
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 236, 24

Conread position: 545-882
Cow position: chr4:47087211-47086880 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 231
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 14, 72

Conread position: 545-929
Cow position: chr4:58873446-58873825 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 257
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 16, 134

Conread position: 545-931
Cow position: chr4:13920220-13919843 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 256
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 25, 8

Conread position: 560-930
Cow position: chr4:11635053-11634678 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 250
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 5, 37

Conread position: 579-790
Cow position: chr4:13926430-13926224 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 152
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 55, 0

Conread position: 596-928
Cow position: chr4:15046114-15046465 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 253
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 87, 59

Conread position: 597-935
Cow position: chr4:36759520-36759875 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 228

Conread position: 597-936
Cow position: chr4:5783979-5784304 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 58

Conread position: 599-890
Cow position: chr4:3244920-3245199 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 193
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 256, 40

Conread position: 600-931
Cow position: chr4:22507129-22506797 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 50

Conread position: 602-887
Cow position: chr4:20925751-20925468 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 213
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 175, 33

Conread position: 619-936
Cow position: chr4:54314340-54314044 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 213
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 304, 27

Conread position: 628-898
Cow position: chr4:15283465-15283732 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 194
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 114, 27

Conread position: 631-932
Cow position: chr4:57652493-57652803 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 225
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 142, 24

Conread position: 631-936
Cow position: chr4:31003075-31002765 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 225
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 154, 24

Conread position: 639-931
Cow position: chr4:5499196-5499489 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 199
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 22, 72

Conread position: 655-936
Cow position: chr4:25924654-25924371 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 210
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 126, 49

Conread position: 657-930
Cow position: chr4:49881702-49881409 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 212
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 38, 50

Conread position: 657-932
Cow position: chr4:6630017-6629744 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 200
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 5, 48

Conread position: 663-936
Cow position: chr4:31586286-31586015 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 205
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 113, 41

Conread position: 674-936
Cow position: chr4:5886663-5886925 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 30

Conread position: 675-872
Cow position: chr4:54347527-54347731 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 156
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 102, 29

Conread position: 680-885
Cow position: chr4:9089751-9089539 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 152
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 64, 21

Conread position: 688-924
Cow position: chr4:52597213-52596970 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 184
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 81, 9

Conread position: 699-935
Cow position: chr4:45401004-45401237 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 165
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 87, 44

Conread position: 702-916
Cow position: chr4:42495636-42495432 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 149
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 703-934
Cow position: chr4:52697228-52697458 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 166
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 98, 14

Conread position: 720-905
Cow position: chr4:4029196-4029390 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 153
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 55, 33

Conread position: 720-905
Cow position: chr4:47409187-47409364 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 107, 48

Conread position: 728-935
Cow position: chr4:4132896-4133102 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 156
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 47, 59

Conread position: 779-924
Cow position: chr4:23536423-23536565 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 48, 27

Conread position: 785-919
Cow position: chr4:6793927-6794058 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 43, 27

Conread position: 785-935
Cow position: chr4:34043160-34043012 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 120
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 43, 26

Conread position: 785-936
Cow position: chr4:4519590-4519739 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 43, 26

Conread position: 793-936
Cow position: chr4:56219376-56219508 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 14, 0

Show alignments to all cow chromosomes.