Cow genome map

Conread name: Thy1-THY010033A06

Conread position: 309-692
Cow position: chr6:4666786-4666397 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 221

Conread position: 311-894
Cow position: chr6:44377284-44377868 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 37

Conread position: 313-923
Cow position: chr6:11159989-11159369 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 136

Conread position: 319-470
Cow position: chr6:29084186-29084035 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 102, 130

Conread position: 319-484
Cow position: chr6:3374545-3374381 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 102, 58

Conread position: 319-543
Cow position: chr6:1095339-1095113 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 168
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 70, 23

Conread position: 319-891
Cow position: chr6:39917189-39917759 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 109

Conread position: 319-935
Cow position: chr6:29077754-29078365 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 137

Conread position: 319-936
Cow position: chr6:41557489-41558120 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 91

Conread position: 320-498
Cow position: chr6:54032255-54032429 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 93, 53

Conread position: 320-528
Cow position: chr6:57474685-57474896 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 148
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 98, 51

Conread position: 320-538
Cow position: chr6:32428258-32428476 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 167
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 99, 73

Conread position: 320-556
Cow position: chr6:11382949-11382709 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 172
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 84, 75

Conread position: 320-556
Cow position: chr6:51071729-51071969 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 177
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 98, 224

Conread position: 320-576
Cow position: chr6:29803822-29804086 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 188
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 96, 60

Conread position: 320-933
Cow position: chr6:45692638-45692033 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 236

Conread position: 321-518
Cow position: chr6:38899750-38899549 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 152
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 97, 151

Conread position: 321-539
Cow position: chr6:57686172-57686391 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 161
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 16, 75

Conread position: 321-541
Cow position: chr6:20332462-20332240 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 167
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 35, 62

Conread position: 321-774
Cow position: chr6:69274767-69274307 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 237

Conread position: 330-528
Cow position: chr6:37689572-37689761 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 148
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 50, 63

Conread position: 330-560
Cow position: chr6:54016274-54016494 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 166
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 86, 5

Conread position: 335-543
Cow position: chr6:16337709-16337496 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 162
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 15, 79

Conread position: 336-534
Cow position: chr6:67821864-67822067 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 149
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 63, 36

Conread position: 336-543
Cow position: chr6:10423206-10423414 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 147
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 53, 76

Conread position: 336-556
Cow position: chr6:31526775-31526558 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 155
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 82, 34

Conread position: 336-560
Cow position: chr6:13592746-13592975 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 162
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 82, 191

Conread position: 336-560
Cow position: chr6:58594066-58593847 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 165
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 190, 57

Conread position: 336-931
Cow position: chr6:31688149-31687558 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 195

Conread position: 336-934
Cow position: chr6:23891594-23892189 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 222

Conread position: 337-628
Cow position: chr6:12519536-12519820 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 212
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 89, 214

Conread position: 337-934
Cow position: chr6:3017488-3018104 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 97

Conread position: 338-541
Cow position: chr6:51191869-51192081 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 149
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 27, 67

Conread position: 339-564
Cow position: chr6:50822271-50822499 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 155
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 79, 43

Conread position: 339-932
Cow position: chr6:45617393-45616802 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 129

Conread position: 340-543
Cow position: chr6:7998056-7998263 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 147
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 78, 135

Conread position: 342-518
Cow position: chr6:3066641-3066466 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 130
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 77, 20

Conread position: 345-910
Cow position: chr6:62754443-62753883 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 88

Conread position: 350-754
Cow position: chr6:6244855-6244468 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 30

Conread position: 352-560
Cow position: chr6:27710702-27710908 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 159
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 69, 7

Conread position: 356-669
Cow position: chr6:39292961-39293260 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 222
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 25, 82

Conread position: 364-934
Cow position: chr6:6635208-6635777 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 37

Conread position: 388-902
Cow position: chr6:23932874-23932394 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 166

Conread position: 405-680
Cow position: chr6:19459146-19459429 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 203
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 16, 77

Conread position: 418-536
Cow position: chr6:20172384-20172499 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 418-885
Cow position: chr6:41157353-41157808 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 98

Conread position: 435-581
Cow position: chr6:66388204-66388055 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 111, 0

Conread position: 442-709
Cow position: chr6:29082913-29082660 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 190
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 36, 47

Conread position: 443-670
Cow position: chr6:5678896-5678679 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 157
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 101, 0

Conread position: 471-789
Cow position: chr6:3374271-3373941 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 235
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 86, 189

Conread position: 533-934
Cow position: chr6:1940233-1939852 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 282
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 85, 12

Conread position: 535-933
Cow position: chr6:53416727-53416320 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 58

Conread position: 537-777
Cow position: chr6:12516067-12516309 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 169
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 18, 86

Conread position: 543-853
Cow position: chr6:46250749-46250452 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 203
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 73, 11

Conread position: 543-936
Cow position: chr6:29299794-29300180 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 269
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 50, 118

Conread position: 547-888
Cow position: chr6:55661974-55662325 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 247
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 16, 76

Conread position: 550-924
Cow position: chr6:66840109-66840491 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 256
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 50, 107

Conread position: 564-936
Cow position: chr6:1077158-1076782 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 275
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 122, 13

Conread position: 578-919
Cow position: chr6:26910427-26910756 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 227
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 23, 43

Conread position: 579-934
Cow position: chr6:23648647-23648289 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 257
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 21, 138

Conread position: 599-934
Cow position: chr6:58593840-58593508 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 230
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 10, 109

Conread position: 602-936
Cow position: chr6:35698117-35697779 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 253
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 96, 34

Conread position: 606-921
Cow position: chr6:44389943-44389625 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 49

Conread position: 618-891
Cow position: chr6:35831863-35832146 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 198
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 88, 28

Conread position: 638-878
Cow position: chr6:5500730-5500482 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 180
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 30, 19

Conread position: 649-930
Cow position: chr6:14280002-14280292 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 221
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 8, 33

Conread position: 655-860
Cow position: chr6:33311461-33311668 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 121, 47

Conread position: 659-885
Cow position: chr6:39293531-39293755 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 160
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 152, 43

Conread position: 661-934
Cow position: chr6:54295986-54296247 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 194
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 166, 43

Conread position: 662-915
Cow position: chr6:37085255-37085509 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 194
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 69, 34

Conread position: 670-916
Cow position: chr6:34556878-34557128 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 178
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 128, 34

Conread position: 674-931
Cow position: chr6:62327915-62328172 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 180
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 108, 27

Conread position: 676-935
Cow position: chr6:35126734-35126476 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 204
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 11, 32

Conread position: 677-898
Cow position: chr6:43596172-43595944 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 162
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 97, 27

Conread position: 679-934
Cow position: chr6:62789396-62789644 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 170
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 149, 25

Conread position: 688-924
Cow position: chr6:24496544-24496302 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 172
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 101, 13

Conread position: 688-931
Cow position: chr6:4666113-4665874 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 180
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 87, 11

Conread position: 688-932
Cow position: chr6:55398187-55398431 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 187
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 11, 48

Conread position: 688-933
Cow position: chr6:40241072-40241316 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 178
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 115, 16

Conread position: 697-934
Cow position: chr6:14162219-14161982 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 176
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 75, 42

Conread position: 702-933
Cow position: chr6:50501995-50502226 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 181
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 74, 115

Conread position: 702-936
Cow position: chr6:5516933-5516707 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 169
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 126, 77

Conread position: 728-924
Cow position: chr6:44771258-44771448 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 146
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 100, 68

Conread position: 753-931
Cow position: chr6:35266030-35265862 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 139
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 26, 0

Conread position: 754-931
Cow position: chr6:15261037-15261221 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 135
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 22, 65

Conread position: 754-931
Cow position: chr6:15262082-15262266 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 135
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 22, 65

Conread position: 756-936
Cow position: chr6:28008995-28008816 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 140
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 18, 56

Conread position: 769-934
Cow position: chr6:6244269-6244108 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 15, 44

Conread position: 776-931
Cow position: chr6:20748869-20749018 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 30, 0

Conread position: 786-929
Cow position: chr6:13092584-13092443 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 41, 25

Conread position: 791-933
Cow position: chr6:24337576-24337436 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 37, 20

Conread position: 796-936
Cow position: chr6:16495111-16494973 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 32, 15

Show alignments to all cow chromosomes.