Cow genome map
| Conread name: | Thy1-THY010033A06 |
| Conread position: | 314-560 |
| Cow position: | chr8:59137911-59137667 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 104, 7 |
| Conread position: | 319-520 |
| Cow position: | chr8:12790849-12790649 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 102, 39 |
| Conread position: | 319-590 |
| Cow position: | chr8:8480951-8480684 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 201 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 88, 180 |
| Conread position: | 319-725 |
| Cow position: | chr8:21078529-21078927 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 90 |
| Conread position: | 319-888 |
| Cow position: | chr8:19369496-19368954 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 36 |
| Conread position: | 319-905 |
| Cow position: | chr8:48682505-48681912 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 22 |
| Conread position: | 319-919 |
| Cow position: | chr8:33437780-33438388 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 202 |
| Conread position: | 319-931 |
| Cow position: | chr8:54158721-54159344 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 249 |
| Conread position: | 319-932 |
| Cow position: | chr8:32719964-32720514 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 56 |
| Conread position: | 319-933 |
| Cow position: | chr8:30021925-30021326 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 40 |
| Conread position: | 319-933 |
| Cow position: | chr8:40432878-40432262 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 14 |
| Conread position: | 319-934 |
| Cow position: | chr8:45686443-45685868 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 117 |
| Conread position: | 320-502 |
| Cow position: | chr8:41951592-41951775 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 98, 54 |
| Conread position: | 320-554 |
| Cow position: | chr8:9985583-9985810 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 74, 110 |
| Conread position: | 320-557 |
| Cow position: | chr8:62093014-62092782 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 19, 94 |
| Conread position: | 320-557 |
| Cow position: | chr8:62113596-62113828 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 19, 94 |
| Conread position: | 320-891 |
| Cow position: | chr8:23441143-23440547 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 360 |
| Conread position: | 320-932 |
| Cow position: | chr8:2974641-2975273 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 60 |
| Conread position: | 321-474 |
| Cow position: | chr8:24517453-24517296 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 96, 59 |
| Conread position: | 321-561 |
| Cow position: | chr8:44857454-44857703 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 321-572 |
| Cow position: | chr8:58857648-58857907 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 86, 186 |
| Conread position: | 321-633 |
| Cow position: | chr8:21119282-21118958 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 85 |
| Conread position: | 321-934 |
| Cow position: | chr8:51877940-51877344 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 66 |
| Conread position: | 335-517 |
| Cow position: | chr8:5219473-5219289 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 83, 18 |
| Conread position: | 335-933 |
| Cow position: | chr8:19772502-19773076 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 108 |
| Conread position: | 336-502 |
| Cow position: | chr8:55551023-55551194 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 82, 39 |
| Conread position: | 336-518 |
| Cow position: | chr8:19876805-19876620 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 82, 162 |
| Conread position: | 336-543 |
| Cow position: | chr8:38248697-38248485 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 336-556 |
| Cow position: | chr8:9262468-9262243 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 80, 60 |
| Conread position: | 336-564 |
| Cow position: | chr8:32326674-32326900 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 85, 64 |
| Conread position: | 336-936 |
| Cow position: | chr8:22103191-22102579 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 110 |
| Conread position: | 339-633 |
| Cow position: | chr8:31886753-31887037 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 68, 119 |
| Conread position: | 339-637 |
| Cow position: | chr8:27369096-27369396 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 196 |
| Conread position: | 341-585 |
| Cow position: | chr8:49384581-49384828 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 77, 108 |
| Conread position: | 345-907 |
| Cow position: | chr8:4337056-4336481 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 220 |
| Conread position: | 363-933 |
| Cow position: | chr8:7104383-7103809 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 8 |
| Conread position: | 441-931 |
| Cow position: | chr8:5874267-5874757 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 104 |
| Conread position: | 446-930 |
| Cow position: | chr8:18725333-18725810 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 16 |
| Conread position: | 459-793 |
| Cow position: | chr8:952164-952488 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 70, 105 |
| Conread position: | 459-936 |
| Cow position: | chr8:40273510-40273036 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 330 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 141, 85 |
| Conread position: | 466-933 |
| Cow position: | chr8:20341571-20341083 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 346 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 130, 33 |
| Conread position: | 508-884 |
| Cow position: | chr8:53891694-53892088 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 162 |
| Conread position: | 545-919 |
| Cow position: | chr8:21945639-21946005 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 30, 78 |
| Conread position: | 545-931 |
| Cow position: | chr8:47128775-47129171 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 26, 94 |
| Conread position: | 545-933 |
| Cow position: | chr8:21585783-21586155 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 250 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 100, 19 |
| Conread position: | 545-936 |
| Cow position: | chr8:18801453-18801841 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 7 |
| Conread position: | 546-781 |
| Cow position: | chr8:51633995-51633752 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 54, 144 |
| Conread position: | 554-924 |
| Cow position: | chr8:36608830-36608466 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 16, 96 |
| Conread position: | 564-924 |
| Cow position: | chr8:37381372-37381722 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 260 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 15, 62 |
| Conread position: | 566-935 |
| Cow position: | chr8:51443326-51442973 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 9, 71 |
| Conread position: | 569-872 |
| Cow position: | chr8:42151761-42151462 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 225 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 8, 27 |
| Conread position: | 570-936 |
| Cow position: | chr8:14617667-14617288 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 96 |
| Conread position: | 593-936 |
| Cow position: | chr8:6508016-6507665 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 251 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 111, 18 |
| Conread position: | 594-920 |
| Cow position: | chr8:18883086-18883420 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 49 |
| Conread position: | 601-917 |
| Cow position: | chr8:15870833-15870517 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 212, 50 |
| Conread position: | 602-903 |
| Cow position: | chr8:53359691-53359380 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 54, 40 |
| Conread position: | 603-924 |
| Cow position: | chr8:34439728-34440057 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 15, 102 |
| Conread position: | 605-732 |
| Cow position: | chr8:31185284-31185409 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 608-936 |
| Cow position: | chr8:8480378-8480039 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 37 |
| Conread position: | 609-933 |
| Cow position: | chr8:6764002-6763678 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 46 |
| Conread position: | 611-933 |
| Cow position: | chr8:31887931-31888235 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 11, 29 |
| Conread position: | 639-931 |
| Cow position: | chr8:10167147-10167429 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 137, 22 |
| Conread position: | 639-935 |
| Cow position: | chr8:49406413-49406126 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 16, 54 |
| Conread position: | 661-921 |
| Cow position: | chr8:19793387-19793127 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 146, 43 |
| Conread position: | 702-932 |
| Cow position: | chr8:11794558-11794782 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 178 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 125, 67 |
| Conread position: | 704-934 |
| Cow position: | chr8:28049159-28048942 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 720-923 |
| Cow position: | chr8:20925918-20925723 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 69, 17 |
| Conread position: | 720-931 |
| Cow position: | chr8:19305435-19305643 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 68, 93 |
| Conread position: | 720-934 |
| Cow position: | chr8:31185621-31185840 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 25, 138 |
| Conread position: | 732-931 |
| Cow position: | chr8:32960200-32960001 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 50, 21 |
| Conread position: | 766-930 |
| Cow position: | chr8:21900111-21900271 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 42 |
| Conread position: | 779-935 |
| Cow position: | chr8:51573225-51573074 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 785-933 |
| Cow position: | chr8:9986252-9986398 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 42, 26 |
| Conread position: | 826-926 |
| Cow position: | chr8:32789788-32789688 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 84 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 831-929 |
| Cow position: | chr8:51562727-51562825 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 81 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.