Cow genome map
| Conread name: | Thy1-THY010033A06 |
| Conread position: | 307-930 |
| Cow position: | chr9:4835046-4834419 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 11 |
| Conread position: | 309-623 |
| Cow position: | chr9:12182028-12181708 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 119, 98 |
| Conread position: | 311-934 |
| Cow position: | chr9:14732395-14731769 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 305 |
| Conread position: | 312-936 |
| Cow position: | chr9:34762795-34763431 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 207 |
| Conread position: | 314-559 |
| Cow position: | chr9:19079938-19080172 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 314-608 |
| Cow position: | chr9:10761295-10761579 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 107, 41 |
| Conread position: | 317-551 |
| Cow position: | chr9:31091871-31091641 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 101, 61 |
| Conread position: | 319-591 |
| Cow position: | chr9:59114426-59114150 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 101, 37 |
| Conread position: | 319-715 |
| Cow position: | chr9:44944058-44944449 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 21 |
| Conread position: | 319-932 |
| Cow position: | chr9:41317924-41318556 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 106 |
| Conread position: | 319-936 |
| Cow position: | chr9:12183796-12183154 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 137 |
| Conread position: | 320-419 |
| Cow position: | chr9:2634127-2634226 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 82 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 320-484 |
| Cow position: | chr9:24953620-24953788 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 96, 46 |
| Conread position: | 320-538 |
| Cow position: | chr9:44408090-44407865 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 43, 192 |
| Conread position: | 320-551 |
| Cow position: | chr9:55651082-55650849 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 98, 31 |
| Conread position: | 320-556 |
| Cow position: | chr9:9635050-9635290 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 98, 50 |
| Conread position: | 320-556 |
| Cow position: | chr9:13845786-13845557 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 98, 31 |
| Conread position: | 320-572 |
| Cow position: | chr9:5485914-5485664 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 98, 55 |
| Conread position: | 320-573 |
| Cow position: | chr9:2223724-2223982 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 87, 225 |
| Conread position: | 320-574 |
| Cow position: | chr9:4025141-4024886 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 96, 139 |
| Conread position: | 321-515 |
| Cow position: | chr9:12547350-12547152 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 321-560 |
| Cow position: | chr9:24850292-24850058 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 107, 14 |
| Conread position: | 322-538 |
| Cow position: | chr9:22976812-22977029 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 89, 58 |
| Conread position: | 322-932 |
| Cow position: | chr9:25502487-25503070 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 13 |
| Conread position: | 323-678 |
| Cow position: | chr9:55364940-55364576 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 343 |
| Conread position: | 325-461 |
| Cow position: | chr9:8406181-8406318 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 91, 45 |
| Conread position: | 325-534 |
| Cow position: | chr9:25997628-25997416 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 92, 48 |
| Conread position: | 331-559 |
| Cow position: | chr9:36581529-36581300 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 84, 10 |
| Conread position: | 336-543 |
| Cow position: | chr9:11849551-11849339 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 336-790 |
| Cow position: | chr9:51269901-51269458 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 243 |
| Conread position: | 336-913 |
| Cow position: | chr9:12198864-12199460 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 53 |
| Conread position: | 337-543 |
| Cow position: | chr9:62034717-62034508 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 78, 43 |
| Conread position: | 337-560 |
| Cow position: | chr9:11830034-11829809 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 81, 33 |
| Conread position: | 341-775 |
| Cow position: | chr9:1281073-1281512 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 18 |
| Conread position: | 342-931 |
| Cow position: | chr9:6109914-6109341 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 31 |
| Conread position: | 343-539 |
| Cow position: | chr9:31777668-31777869 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 347-584 |
| Cow position: | chr9:62617891-62617657 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 81, 23 |
| Conread position: | 347-932 |
| Cow position: | chr9:18570364-18570956 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 218 |
| Conread position: | 363-796 |
| Cow position: | chr9:5622018-5622447 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 22 |
| Conread position: | 420-896 |
| Cow position: | chr9:9077162-9077628 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 77 |
| Conread position: | 429-730 |
| Cow position: | chr9:39993677-39993976 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 167, 121 |
| Conread position: | 437-786 |
| Cow position: | chr9:52725421-52725774 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 125 |
| Conread position: | 438-904 |
| Cow position: | chr9:7670547-7670082 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 102 |
| Conread position: | 456-935 |
| Cow position: | chr9:34188874-34188410 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 51 |
| Conread position: | 458-790 |
| Cow position: | chr9:53596899-53597228 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 239 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 142, 18 |
| Conread position: | 459-935 |
| Cow position: | chr9:2638410-2638890 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 94 |
| Conread position: | 481-936 |
| Cow position: | chr9:1526902-1527374 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 186 |
| Conread position: | 484-892 |
| Cow position: | chr9:4985476-4985897 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 296 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 21, 7 |
| Conread position: | 487-931 |
| Cow position: | chr9:38698350-38697924 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 291, 79 |
| Conread position: | 497-780 |
| Cow position: | chr9:35527584-35527302 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 95, 23 |
| Conread position: | 522-767 |
| Cow position: | chr9:46657812-46658043 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 542-918 |
| Cow position: | chr9:12565201-12564836 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 269 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 70, 11 |
| Conread position: | 548-934 |
| Cow position: | chr9:1517475-1517860 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 30, 48 |
| Conread position: | 554-933 |
| Cow position: | chr9:35224763-35224390 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 252 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 90, 74 |
| Conread position: | 554-935 |
| Cow position: | chr9:39001580-39001208 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 274 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 21, 12 |
| Conread position: | 574-775 |
| Cow position: | chr9:24886497-24886697 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 576-934 |
| Cow position: | chr9:47200426-47200782 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 20, 54 |
| Conread position: | 602-928 |
| Cow position: | chr9:34674808-34674508 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 230 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 225, 49 |
| Conread position: | 602-930 |
| Cow position: | chr9:15855276-15855604 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 56 |
| Conread position: | 603-844 |
| Cow position: | chr9:50108842-50108602 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 80, 16 |
| Conread position: | 605-777 |
| Cow position: | chr9:40858922-40859093 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 30, 51 |
| Conread position: | 612-934 |
| Cow position: | chr9:55262498-55262808 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 215, 18 |
| Conread position: | 619-903 |
| Cow position: | chr9:32688745-32689018 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 15, 28 |
| Conread position: | 627-934 |
| Cow position: | chr9:56411390-56411690 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 162, 9 |
| Conread position: | 655-880 |
| Cow position: | chr9:58125893-58125661 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 117, 47 |
| Conread position: | 657-928 |
| Cow position: | chr9:62721136-62721406 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 128, 47 |
| Conread position: | 658-934 |
| Cow position: | chr9:8234307-8234040 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 112, 34 |
| Conread position: | 661-932 |
| Cow position: | chr9:13072073-13071793 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 21, 47 |
| Conread position: | 663-935 |
| Cow position: | chr9:19835682-19835963 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 38, 49 |
| Conread position: | 664-905 |
| Cow position: | chr9:45140597-45140348 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 112, 40 |
| Conread position: | 677-934 |
| Cow position: | chr9:26585398-26585147 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 99, 27 |
| Conread position: | 688-930 |
| Cow position: | chr9:23294313-23294076 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 94, 16 |
| Conread position: | 697-936 |
| Cow position: | chr9:15282844-15282602 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 58, 7 |
| Conread position: | 719-936 |
| Cow position: | chr9:47073708-47073913 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 136, 58 |
| Conread position: | 720-892 |
| Cow position: | chr9:19081951-19082127 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 49, 88 |
| Conread position: | 729-935 |
| Cow position: | chr9:55203021-55203228 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 70, 27 |
| Conread position: | 739-923 |
| Cow position: | chr9:33326234-33326054 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 89, 40 |
| Conread position: | 753-936 |
| Cow position: | chr9:35795045-35794858 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 24, 64 |
| Conread position: | 776-931 |
| Cow position: | chr9:10003631-10003482 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 779-930 |
| Cow position: | chr9:56795142-56795286 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 785-931 |
| Cow position: | chr9:39994187-39994331 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 785-936 |
| Cow position: | chr9:40923078-40923228 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 43, 21 |
| Conread position: | 790-931 |
| Cow position: | chr9:35527059-35526920 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 39, 23 |
| Conread position: | 812-934 |
| Cow position: | chr9:37301895-37301772 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 813-934 |
| Cow position: | chr9:8779687-8779809 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
Show alignments to all cow chromosomes.