Cow genome map

Conread name: Thy1-THY010033A06

Conread position: 285-936
Cow position: chrX:18814142-18814805 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 205

Conread position: 302-936
Cow position: chrX:25453175-25453801 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 78

Conread position: 309-560
Cow position: chrX:19818880-19818625 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 172
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 109, 101

Conread position: 311-551
Cow position: chrX:11982137-11982368 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 176
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 7, 52

Conread position: 311-936
Cow position: chrX:2147345-2147938 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 55

Conread position: 314-933
Cow position: chrX:2186256-2186882 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 215

Conread position: 319-484
Cow position: chrX:37956365-37956529 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 102, 36

Conread position: 319-495
Cow position: chrX:24952548-24952372 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 136
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 101, 81

Conread position: 319-531
Cow position: chrX:12826759-12826975 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 156
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 98, 81

Conread position: 319-534
Cow position: chrX:24827314-24827534 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 159
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 13, 17

Conread position: 319-556
Cow position: chrX:30729404-30729165 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 168
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 98, 165

Conread position: 319-745
Cow position: chrX:10311755-10312171 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 141

Conread position: 319-781
Cow position: chrX:8558454-8557999 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 54

Conread position: 319-919
Cow position: chrX:12689078-12688464 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 232

Conread position: 319-934
Cow position: chrX:11675073-11675703 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 252

Conread position: 320-503
Cow position: chrX:13245606-13245790 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 141
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 96, 138

Conread position: 320-591
Cow position: chrX:4631662-4631390 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 60

Conread position: 320-891
Cow position: chrX:4597716-4597113 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 83

Conread position: 320-923
Cow position: chrX:24201191-24201773 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 31

Conread position: 320-935
Cow position: chrX:23254196-23253589 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 151

Conread position: 321-639
Cow position: chrX:24285967-24286292 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 237
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 100, 187

Conread position: 321-932
Cow position: chrX:20504726-20505330 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 152

Conread position: 322-795
Cow position: chrX:41660189-41660636 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 330
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 99, 137

Conread position: 325-934
Cow position: chrX:19018241-19017611 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 43

Conread position: 336-562
Cow position: chrX:35925981-35926212 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 157
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 81, 0

Conread position: 336-932
Cow position: chrX:21816291-21816891 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 134

Conread position: 339-536
Cow position: chrX:42758103-42758304 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 147
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 79, 21

Conread position: 339-543
Cow position: chrX:20810316-20810118 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 147
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 79, 91

Conread position: 359-933
Cow position: chrX:16816721-16817267 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 160

Conread position: 362-905
Cow position: chrX:21886064-21885501 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 9

Conread position: 385-905
Cow position: chrX:956555-957086 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 140

Conread position: 388-886
Cow position: chrX:43647686-43647180 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 105

Conread position: 402-542
Cow position: chrX:4754656-4754794 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 106
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 22, 43

Conread position: 409-936
Cow position: chrX:25106311-25106832 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 252

Conread position: 415-746
Cow position: chrX:1426869-1427186 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 241
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 90, 152

Conread position: 418-711
Cow position: chrX:3405034-3404745 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 211
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 151, 38

Conread position: 418-786
Cow position: chrX:31816803-31817147 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 323, 14

Conread position: 419-933
Cow position: chrX:9910641-9910132 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 33

Conread position: 443-714
Cow position: chrX:18517923-18518210 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 213
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 150, 222

Conread position: 447-936
Cow position: chrX:4590092-4590577 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 76

Conread position: 451-681
Cow position: chrX:19217182-19216946 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 174
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 65, 211

Conread position: 465-713
Cow position: chrX:9051276-9051028 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 179
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 94, 58

Conread position: 468-934
Cow position: chrX:40353471-40353935 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 47

Conread position: 491-793
Cow position: chrX:24952190-24951893 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 233
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 7, 149

Conread position: 500-928
Cow position: chrX:27458542-27458117 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 97

Conread position: 516-933
Cow position: chrX:19127432-19127017 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 50

Conread position: 535-936
Cow position: chrX:6471929-6472339 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 26

Conread position: 540-896
Cow position: chrX:25921559-25921214 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 254
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 59, 26

Conread position: 542-919
Cow position: chrX:17200636-17200999 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 246
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 285, 65

Conread position: 545-933
Cow position: chrX:17516452-17516823 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 259
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 15, 7

Conread position: 545-936
Cow position: chrX:10462547-10462935 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 262
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 45, 81

Conread position: 546-934
Cow position: chrX:11982831-11983212 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 285
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 57, 109

Conread position: 550-930
Cow position: chrX:10534314-10534703 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 271
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 42, 11

Conread position: 553-922
Cow position: chrX:4625142-4625528 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 110

Conread position: 567-788
Cow position: chrX:32546141-32546369 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 169
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 7, 87

Conread position: 568-932
Cow position: chrX:20715982-20715623 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 239
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 24, 94

Conread position: 569-919
Cow position: chrX:4424914-4425261 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 236
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 39, 79

Conread position: 570-931
Cow position: chrX:18700107-18699735 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 12

Conread position: 571-928
Cow position: chrX:37364672-37365020 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 252
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 29, 82

Conread position: 573-904
Cow position: chrX:4794235-4793916 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 223
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 62, 21

Conread position: 591-919
Cow position: chrX:4631095-4630764 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 65

Conread position: 593-919
Cow position: chrX:37139585-37139899 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 212
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 13, 65

Conread position: 597-934
Cow position: chrX:25653400-25653712 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 243
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 230, 58

Conread position: 598-934
Cow position: chrX:40698529-40698848 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 242
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 26, 49

Conread position: 601-934
Cow position: chrX:4601351-4601028 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 231
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 29, 0

Conread position: 603-781
Cow position: chrX:39190944-39190768 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 126
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 610-931
Cow position: chrX:28515875-28515577 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 219
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 64, 45

Conread position: 611-936
Cow position: chrX:13403445-13403120 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 44

Conread position: 627-919
Cow position: chrX:263809-263531 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 195
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 194, 30

Conread position: 636-936
Cow position: chrX:4440174-4440480 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 230
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 139, 25

Conread position: 639-923
Cow position: chrX:37236335-37236618 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 216
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 130, 18

Conread position: 648-936
Cow position: chrX:5956992-5956710 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 216
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 7, 25

Conread position: 654-936
Cow position: chrX:44248892-44248611 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 190
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 56, 19

Conread position: 655-932
Cow position: chrX:1330453-1330173 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 206
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 133, 49

Conread position: 673-936
Cow position: chrX:37749011-37749286 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 198
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 103, 31

Conread position: 705-933
Cow position: chrX:6672170-6672405 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 175
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 71, 23

Conread position: 712-935
Cow position: chrX:18518438-18518664 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 171
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 69, 25

Conread position: 720-929
Cow position: chrX:11851360-11851153 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 153
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 64, 30

Conread position: 720-936
Cow position: chrX:34100426-34100636 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 157
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 77, 70

Conread position: 737-936
Cow position: chrX:19391839-19391645 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 151
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 47, 16

Conread position: 747-934
Cow position: chrX:503117-502936 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 142
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 81, 36

Conread position: 776-930
Cow position: chrX:20958051-20958201 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 52, 35

Conread position: 779-932
Cow position: chrX:35552819-35552964 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 50, 32

Conread position: 779-934
Cow position: chrX:30785032-30785182 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 27, 0

Conread position: 783-912
Cow position: chrX:30729305-30729178 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 45, 28

Conread position: 785-925
Cow position: chrX:1427755-1427892 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 43, 26

Conread position: 785-935
Cow position: chrX:24286540-24286684 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 42, 26

Show alignments to all cow chromosomes.