Cow genome map
| Conread name: | Thy1-THY010036D02 |
| Conread position: | 7-353 |
| Cow position: | chr5:57029602-57029256 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 17 |
| Conread position: | 278-724 |
| Cow position: | chr5:27653714-27653284 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 298 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 57, 12 |
| Conread position: | 355-724 |
| Cow position: | chr5:52803636-52803996 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 105 |
| Conread position: | 359-731 |
| Cow position: | chr5:32735202-32734838 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 258 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 15, 104 |
| Conread position: | 360-724 |
| Cow position: | chr5:24328400-24328753 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 106, 8 |
| Conread position: | 362-733 |
| Cow position: | chr5:46657416-46657764 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 102, 9 |
| Conread position: | 363-731 |
| Cow position: | chr5:41552595-41552242 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 248 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 103, 5 |
| Conread position: | 365-724 |
| Cow position: | chr5:6527190-6527531 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 28 |
| Conread position: | 367-691 |
| Cow position: | chr5:12683210-12682906 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 235 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 183, 52 |
| Conread position: | 371-721 |
| Cow position: | chr5:31597388-31597726 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 91, 109 |
| Conread position: | 373-721 |
| Cow position: | chr5:27337655-27337979 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 23, 36 |
| Conread position: | 373-721 |
| Cow position: | chr5:61275221-61274891 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 90 |
| Conread position: | 373-731 |
| Cow position: | chr5:9688735-9688386 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 247 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 89, 110 |
| Conread position: | 373-731 |
| Cow position: | chr5:26768140-26768484 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 228, 81 |
| Conread position: | 373-733 |
| Cow position: | chr5:39248588-39248241 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 89 |
| Conread position: | 374-733 |
| Cow position: | chr5:7371569-7371221 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 22, 40 |
| Conread position: | 375-721 |
| Cow position: | chr5:27568505-27568840 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 91, 87 |
| Conread position: | 375-724 |
| Cow position: | chr5:47774540-47774876 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 91, 107 |
| Conread position: | 382-671 |
| Cow position: | chr5:41964666-41964387 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 213 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 186, 78 |
| Conread position: | 388-732 |
| Cow position: | chr5:49595205-49594871 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 242 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 26, 17 |
| Conread position: | 389-724 |
| Cow position: | chr5:41978496-41978801 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 241 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 181, 68 |
| Conread position: | 430-724 |
| Cow position: | chr5:45698379-45698673 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 32, 63 |
| Conread position: | 480-731 |
| Cow position: | chr5:29007374-29007627 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 61, 164 |
| Conread position: | 487-732 |
| Cow position: | chr5:26170290-26170537 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 489-721 |
| Cow position: | chr5:28029916-28030150 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 489-721 |
| Cow position: | chr5:34964097-34963864 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 83, 15 |
| Conread position: | 490-680 |
| Cow position: | chr5:48503025-48503214 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 80, 108 |
| Conread position: | 492-724 |
| Cow position: | chr5:29455977-29456211 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 55, 141 |
| Conread position: | 493-733 |
| Cow position: | chr5:27062298-27062058 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 25, 92 |
| Conread position: | 567-724 |
| Cow position: | chr5:23689370-23689211 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 600-722 |
| Cow position: | chr5:28045523-28045401 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.